BioWilko
Bioinformatician at the University of Birmingham, general python/nextflow monkey for Loman labs and CLIMB-COVID admin.
University of Birmingham
Pinned Repositories
abphm_hackathon_metagenomics
align_trim
artic-ncov2019
ARTIC nanopore protocol for nCoV2019 novel coronavirus
artic-tools
a set of tools for viral amplicon schemes
battlesnek
Brazil-metagenomics-VRCZS
cadde_workshop_2023_rampart_config
climb-covid-outbound-submissions
release scripts for coguk
ncov2019-artic-nf
A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019
recurrent-sars-cov-2-mutations
BioWilko's Repositories
BioWilko/ncov2019-artic-nf
A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019
BioWilko/abphm_hackathon_metagenomics
BioWilko/recurrent-sars-cov-2-mutations
BioWilko/align_trim
BioWilko/artic-ncov2019
ARTIC nanopore protocol for nCoV2019 novel coronavirus
BioWilko/artic-tools
a set of tools for viral amplicon schemes
BioWilko/battlesnek
BioWilko/cadde_workshop_2023_rampart_config
BioWilko/climb-covid-outbound-submissions
release scripts for coguk
BioWilko/co1_fish
BioWilko/contaminatrix
BioWilko/datapipe
Nextflow implementation of grapevine
BioWilko/datasets-sars-cov-2
BioWilko/docs
BioWilko/elan-nextflow
for data flowing to birmingham
BioWilko/EToKi
all methods related to Enterobase
BioWilko/fieldbioinformatics
The ARTIC field bioinformatics pipeline
BioWilko/map-of-github-data
This repository contains tiles and data for the map of github
BioWilko/mpxv_scripts
BioWilko/mscape_demo_nf
BioWilko/Papaya
BioWilko/Porechop
adapter trimmer for Oxford Nanopore reads
BioWilko/primer-schemes
Primer schemes for real-time genome epidemiology
BioWilko/reticulatus
A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads
BioWilko/roz
CLIMB-TRE S3 ingest solution and officious bureaucrat.
BioWilko/scylla
single sample processing
BioWilko/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
BioWilko/varys
A pika based client package for rabbitMQ for use in CLIMB-tree
BioWilko/varys-feedstock
A conda-smithy repository for varys.
BioWilko/website