Biocodings

Pinned Repositories

2020plus
Classifies genes as an oncogene, tumor suppressor gene, or as a non-driver gene by using Random Forests
Language:Python00
4C-Workflow
Generalized Snakemake workflow for R.4Cker
Language:Python00
admixture
Simple accelerated EM implementation of the ADMIXTURE model in R, plus extensions.
Language:OpenEdge ABL00
AfterQC
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
Language:Python00
altair
Declarative statistical visualization library for Python
Language:Jupyter Notebook00
alview
Alview : Alignment View for BAM files - a fast,portable tool for viewing short reads as native GUI program, command line or via webserver
Language:C00
Anaquin
Statistical analysis of sequins in C++ and R
Language:C++00
AnatomyOfMatplotlib
Anatomy of Matplotlib -- tutorial developed for the SciPy conference
Language:Jupyter Notebook00
lz4
Extremely Fast Compression algorithm
Language:C10
Pipeliner
Pipeliner Program
Language:Python10

Biocodings's Repositories

Biocodings/awesome-electron
Useful resources for creating apps with Electron
1
Biocodings/awesome-machine-learning
A curated list of awesome Machine Learning frameworks, libraries and software.
Language:Python1 1 0
Biocodings/Baidu-XunleiVIP
百度网盘超级会员，迅雷会员、爱奇艺会员账号每日分享，还有优酷，腾讯，芒果等VIP。AND。百度网盘(百度云)不限速工具分享。
1
Biocodings/biocommons.seqrepo
non-redundant, compressed, journalled, file-based storage for biological sequences
Language:Python1 1 0
Biocodings/Ci-Aria2BDY
基于CX-百度云盘脚本修改，增加Aria2远程下载支持，增加服务器RPC令牌设置提升安全性，增加本机下载支持，增加Aria2远程HTTPS接口支持
Language:JavaScript1 1 0
Biocodings/code-of-learn-deep-learning-with-pytorch
This is code of book "Learn Deep Learning with PyTorch"
Language:Jupyter Notebook1 1 0
Biocodings/deep-review
A collaboratively written review paper on deep learning, genomics, and precision medicine
Language:CSS1
Biocodings/deepvariant
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Language:Python1 1 0
Biocodings/fairseq
Facebook AI Research Sequence-to-Sequence Toolkit written in Python.
Language:Python1
Biocodings/hundo
:100: Snakemake-based amplicon processing protocol for 16S and ITS sequences.
Language:HTML1 1 0
Biocodings/machine-learning-yearning
Translation of <Machine Learning Yearning> by Andrew NG
1
Biocodings/masif
MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.
Language:Python1 1 0
Biocodings/neoantigen-vaccine-pipeline
Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines
Language:Jupyter Notebook1 1 0
Biocodings/neoantigens
🏺 Exploring novel tumor epitope identification
Language:Python1 1 0
Biocodings/proteogenomics-analysis-workflow
IPAW: a Nextflow workflow for proteogenomics
Language:Groovy1 1 0
Biocodings/pyGeno
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
Language:Python1
Biocodings/python-machine-learning-book-2nd-edition
The "Python Machine Learning (2nd edition)" book code repository and info resource
Language:Jupyter Notebook1 1 0
Biocodings/PyTorch-Tutorial
Build your neural network easy and fast
Language:Jupyter Notebook1 1 0
Biocodings/react-native-website
The site and docs for React Native
Language:JavaScript1 1 0
Biocodings/Roadmap-of-DL-and-ML
Roadmap of DL and ML, some courses, study notes and paper summary
1 1 0
Biocodings/SpliceAI
A deep learning-based tool to identify splice variants
Language:Python1 1 0
Biocodings/ssGSEA2.0
Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
Language:R1 1 0
Biocodings/StockAnalysisSystem
A framework for stock data fetching, persistence and analysing
1
Biocodings/tesla
Repository for published code from Tumor nEoantigen SeLection Alliance
Language:R1 1 0
Biocodings/text_classification
all kinds of text classificaiton models and more with deep learning
Language:Python1 1 0
Biocodings/umccrise
Bcbio results umccrisation
1
Biocodings/vim-plug
:hibiscus: Minimalist Vim Plugin Manager
Language:Vim Script1 1 0
Biocodings/vnpy
基于Python的开源量化交易平台开发框架
Language:C++1
Biocodings/Copybook
生成拼音、汉字、汉字字帖
Biocodings/zitie
python生成田字格字帖
Language:Python1 0