Pinned Repositories
classify_blast_results_from_PFAM_database
This R script is made to convert the PFAM IDs from Blast result tables to interpretable descriptions and molecular function names of proteins
merge_abundances
merge_fastq_files.pl
A simple Perl script made for merging reads and barcodes generated by Illumina sequencing in fastq format.
MPI-blastn
A high performance parallel version of nucleotide BLAST+ for sequence search
MPI-blastp
High performance tool for running protein sequence search based on BLAST+ (2.2.26). Shared (OpenMP) and distributed (MPI) memory optimizations.
NCBI-taxcollector
ncbitc_functions
A tool for searching NCBI taxonomy information.
PANGEA-plus
A new implementation of PANGEA pipeline for metagenomics with multiple classification methods and consensus analysis
SILVA-taxcollector
A tool for converting blast results to taxonomic information, useful for generating OTU tables. This version supports blast results acquired using SILVA 16S/18S database.
trim_phylip_alignment
A simple script for trimming multiple sequence alignments in phylip format
Bioinformatic Tools for sequence analysis's Repositories
Bioinfo-Tools/PANGEA-plus
A new implementation of PANGEA pipeline for metagenomics with multiple classification methods and consensus analysis
Bioinfo-Tools/NCBI-taxcollector
Bioinfo-Tools/merge_fastq_files.pl
A simple Perl script made for merging reads and barcodes generated by Illumina sequencing in fastq format.
Bioinfo-Tools/MPI-blastn
A high performance parallel version of nucleotide BLAST+ for sequence search
Bioinfo-Tools/ncbitc_functions
A tool for searching NCBI taxonomy information.
Bioinfo-Tools/classify_blast_results_from_PFAM_database
This R script is made to convert the PFAM IDs from Blast result tables to interpretable descriptions and molecular function names of proteins
Bioinfo-Tools/merge_abundances
Bioinfo-Tools/MPI-blastp
High performance tool for running protein sequence search based on BLAST+ (2.2.26). Shared (OpenMP) and distributed (MPI) memory optimizations.
Bioinfo-Tools/SILVA-taxcollector
A tool for converting blast results to taxonomic information, useful for generating OTU tables. This version supports blast results acquired using SILVA 16S/18S database.
Bioinfo-Tools/trim_phylip_alignment
A simple script for trimming multiple sequence alignments in phylip format