Bioinfo JavierreLab
We are a group of passionate bioinformaticians with an insatiable thirst for learning computational pipelines about spatio-temporal organization of the genome
Badalona
Pinned Repositories
CUTAG_lib
cutandrun
Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.
PCHiC-specificity-score-analysis
Script for the specificity score analysis in Javierre, Burren, Wilder, Kreuzhuber, Hill et al. (2016).
scCut-Tag_2020
Code required to reproduce analysis of the single cell Cut and Tag data in the resource paper (Bartosovic et. al., 2020)
vsn-pipelines
A repository of pipelines for single-cell data in Nextflow DSL2
Bioinfo JavierreLab's Repositories
BioinfoJavierreLab/CUTAG_lib
BioinfoJavierreLab/cutandrun
Analysis pipeline for CUT&RUN and CUT&TAG experiments that includes QC, support for spike-ins, IgG controls, peak calling and downstream analysis.
BioinfoJavierreLab/PCHiC-specificity-score-analysis
Script for the specificity score analysis in Javierre, Burren, Wilder, Kreuzhuber, Hill et al. (2016).
BioinfoJavierreLab/scCut-Tag_2020
Code required to reproduce analysis of the single cell Cut and Tag data in the resource paper (Bartosovic et. al., 2020)
BioinfoJavierreLab/vsn-pipelines
A repository of pipelines for single-cell data in Nextflow DSL2