The Bioinformatics Toolsmith Laboratory

Pinned Repositories

Alignment-Free-Kmer-Statistics
Supplementary data for "A survey and evaluations of histogram-based statistics in alignment-free sequence comparison"
Language:C++4 3 01
EnhancerTracker
A computation tool for assessing the similarity among three sequences taking into account their enhancer activities
Language:Jupyter Notebook1 2 00
FASTCAR
Fast and Accurate Search Tool for Classification And Regression in global sequence similarity
Language:C++3 3 22
Identity
Language:C++31 3 233
Look4LTRs
Long Terminal Repeat Retrotransposon detection tool capable of finding recently nested LTR RTs de novo.
Language:C++2 2 30
Look4TRs
Look4TRs: A de-novo tool for detecting simple tandem repeats using self-supervised hidden Markov models
Language:C++2 3 21
LtrDetector
Language:C++16 6 114
MeShClust
MeShClust: an intelligent tool for clustering DNA sequences
Language:C++36 6 1212
MeShClust2
MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences
Language:C++13 3 91
Red
Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.
Language:C++14 4 38

The Bioinformatics Toolsmith Laboratory's Repositories

BioinformaticsToolsmith/MeShClust
MeShClust: an intelligent tool for clustering DNA sequences
Language:C++36 6 1212
BioinformaticsToolsmith/Identity
Language:C++31 3 233
BioinformaticsToolsmith/LtrDetector
Language:C++16 6 114
BioinformaticsToolsmith/Red
Red: an intelligent, rapid, accurate tool for detecting repeats de-novo on the genomic scale.
Language:C++14 4 38
BioinformaticsToolsmith/MeShClust2
MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences
Language:C++13 3 91
BioinformaticsToolsmith/Alignment-Free-Kmer-Statistics
Supplementary data for "A survey and evaluations of histogram-based statistics in alignment-free sequence comparison"
Language:C++4 3 01
BioinformaticsToolsmith/FASTCAR
Fast and Accurate Search Tool for Classification And Regression in global sequence similarity
Language:C++3 3 22
BioinformaticsToolsmith/Look4LTRs
Long Terminal Repeat Retrotransposon detection tool capable of finding recently nested LTR RTs de novo.
Language:C++2 2 30
BioinformaticsToolsmith/Look4TRs
Look4TRs: A de-novo tool for detecting simple tandem repeats using self-supervised hidden Markov models
Language:C++2 3 21
BioinformaticsToolsmith/EnhancerTracker
A computation tool for assessing the similarity among three sequences taking into account their enhancer activities
Language:Jupyter Notebook1 2 00
BioinformaticsToolsmith/HebbPlot
Language:Perl1 3 10
BioinformaticsToolsmith/IdentityData
Data for Identity and MeShClust v3.0
0 1 00
BioinformaticsToolsmith/MsDetector
This is a tool for finding micro satellites in a chromosome.
0 3 00
BioinformaticsToolsmith/MetricLearning
Language:Jupyter Notebook3 0
BioinformaticsToolsmith/RedPipeline
A pipeline for detecting and classifying repeats
Language:Python2 0