Dimension of 'distance' in LR permutation test
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joan-yanqiong commented
Hi,
I started started exploring xenium data and was trying out the tutorial. For the st.tl.cci.run function, one of the inputs is 'distance'. I was wondering what the dimension of that is. I saw that None means, immediate neighbours and 0 for within-spot. I don't have immediate neighbours, so I have to increase the distance. Is the distance just the number of spots in the grid?
duypham2108 commented
The distance is the pixel length as the radius from each spot center. We will query all the spots within that radius