joan-yanqiong
Bioinformatics Analyst in the Gaiti Lab.
Princess Margaret Cancer Centre (University Health Network)Toronto, Canada
Pinned Repositories
scrnaseq-cellcomm-pipeline
Pipeline for inferring cell-cell interactions from scRNAseq data using multiple publicly available tools.
8dc00-mia
TU/e 8DC00 Medical Image Analysis course materials.
8dm50-machine-learning
TU/e 8DM50 Machine Learning in Medical Imaging and Biology course materials.
8p361-project-imaging
TU/e 8P361 Project Imaging course materials.
Cell-Cell-Communication
spatial
mutation-calling
Mutation Calling Pipelines
RaCInG
The random graph model to infer cell-cell communication networks based on bulk RNA-seq data. Contains the code used for the "Mathematically mapping the network of cells in the tumor microenvironment" paper.
spatial_features_manuscript
Analysis for the spatial features manuscript
spotlight_docker
joan-yanqiong's Repositories
joan-yanqiong/mutation-calling
Mutation Calling Pipelines
joan-yanqiong/RaCInG
The random graph model to infer cell-cell communication networks based on bulk RNA-seq data. Contains the code used for the "Mathematically mapping the network of cells in the tumor microenvironment" paper.
joan-yanqiong/8dc00-mia
TU/e 8DC00 Medical Image Analysis course materials.
joan-yanqiong/8dm50-machine-learning
TU/e 8DM50 Machine Learning in Medical Imaging and Biology course materials.
joan-yanqiong/8p361-project-imaging
TU/e 8P361 Project Imaging course materials.
joan-yanqiong/Cell-Cell-Communication
spatial
joan-yanqiong/CellChat
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
joan-yanqiong/cuda-convnet2
Automatically exported from code.google.com/p/cuda-convnet2
joan-yanqiong/custom-widgets
The collection of custom widgets for SurveyJS: Survey Library and Survey Creator :package:
joan-yanqiong/ImageMagick
ImageMagick 7
joan-yanqiong/Inception-v4
Inception-v4, Inception - Resnet-v1 and v2 Architectures in Keras
joan-yanqiong/joan-yanqiong
Config files for my GitHub profile.
joan-yanqiong/material-ui
React components for faster and simpler web development. Build your own design system, or start with Material Design.
joan-yanqiong/MERINGUE
characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular densities
joan-yanqiong/MFP
Mollecular Functional Portraits
joan-yanqiong/MOFA2
Multi-Omics Factor Analysis V2 (MOFA+)
joan-yanqiong/pak
A fresh approach to package installation
joan-yanqiong/quanTIseq
a computational pipeline for the quantification of the Tumor Immune contexture from human RNA-seq data
joan-yanqiong/repenvr
R-package for creating reproducible environments for R projects.
joan-yanqiong/RNA_MUTECT_1.0-1
joan-yanqiong/RNA_MUTECt_WMN
joan-yanqiong/ScaleMethyl
joan-yanqiong/scenicplus
SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.
joan-yanqiong/SpatialBenchmarking
joan-yanqiong/SpatialDM
Spatial direct messaging detected by bivariate Moran
joan-yanqiong/stPlus
stPlus: reference-based enhancement of spatial transcriptomics
joan-yanqiong/test_repo
joan-yanqiong/todo-to-issue-action
Action that converts TODO comments to GitHub issues on push.