Pinned Repositories
Bioviking.github.io
CyanoProteomics
Project Description Here we take interest in data from light limitation experiments of Cyanobacteria, carried out at KTH/SciLifeLab. Cyanobacteria are of interest for biofuel production as their main source of energy under natural conditions is sunlight, and hence could transfer sunlight into chemical energy. Here we have collected samples from a bioreactor, under 4 different light conditions. The samples (in triplicates) have subsequently been analyzed by LC-MS/MS. The raw data files from the experiment are available from Vital Vialas. Your task is to: Match your data using MaxLFQ or OpenMS Evaluate which proteins that are significantly correlating with sunlight. As the different light conditions render different cell size, estimate the cell volume/surface ratio based on the cytosolic/membrane protein concentration ratio across the different light conditions.
Protein_Prediction_Project
Protein structure prediction of membrane and globular proteins
ryno_inc_website
scilife_summer_project
Summer project with the Envgen group at Science for life laboratory
SU_biophysics
For the lab tutorials from Stockholm University Biophysics course
SU_comparative_genomics
A git for Comparative genomics course practicals
Bioviking's Repositories
Bioviking/CyanoProteomics
Project Description Here we take interest in data from light limitation experiments of Cyanobacteria, carried out at KTH/SciLifeLab. Cyanobacteria are of interest for biofuel production as their main source of energy under natural conditions is sunlight, and hence could transfer sunlight into chemical energy. Here we have collected samples from a bioreactor, under 4 different light conditions. The samples (in triplicates) have subsequently been analyzed by LC-MS/MS. The raw data files from the experiment are available from Vital Vialas. Your task is to: Match your data using MaxLFQ or OpenMS Evaluate which proteins that are significantly correlating with sunlight. As the different light conditions render different cell size, estimate the cell volume/surface ratio based on the cytosolic/membrane protein concentration ratio across the different light conditions.
Bioviking/Bioviking.github.io
Bioviking/Protein_Prediction_Project
Protein structure prediction of membrane and globular proteins
Bioviking/ryno_inc_website
Bioviking/scilife_summer_project
Summer project with the Envgen group at Science for life laboratory
Bioviking/SU_biophysics
For the lab tutorials from Stockholm University Biophysics course
Bioviking/SU_comparative_genomics
A git for Comparative genomics course practicals