Pinned Repositories
fair-bio-practice
FAIR in (biological) practice
fair-bio-practice
FAIR in (biological) practice
ISS_skeletalmuscle
Workflows associated with analysis of in situ sequencing data of murine skeletal muscle.
minerva
NMJ_analysis
Code chunks used to analyse neuromuscular junction (NMJ) images, morphology and data.
proteomic_NMJ_enrichment
R scripts used to analyse human ageing muscle and NMJ-enriched samples following proteomic quantification. For example how to create an annotated heatmap using R's Pheatmap package and save it as a scalable vector graphic to make final layout edits in e.g. Affinity Designer or Photoshop for final publication quality figures.
transcriptomics
A collection of code and notebooks associated with transcriptomics workflows.
fair-bio-practice
FAIR in (biological) practice
Lee_2023
All the code described in the Lee et al. (2023) paper
cellpose
a generalist algorithm for cellular segmentation with human-in-the-loop capabilities
Boehmin's Repositories
Boehmin/fair-bio-practice
FAIR in (biological) practice
Boehmin/ISS_skeletalmuscle
Workflows associated with analysis of in situ sequencing data of murine skeletal muscle.
Boehmin/minerva
Boehmin/NMJ_analysis
Code chunks used to analyse neuromuscular junction (NMJ) images, morphology and data.
Boehmin/proteomic_NMJ_enrichment
R scripts used to analyse human ageing muscle and NMJ-enriched samples following proteomic quantification. For example how to create an annotated heatmap using R's Pheatmap package and save it as a scalable vector graphic to make final layout edits in e.g. Affinity Designer or Photoshop for final publication quality figures.
Boehmin/transcriptomics
A collection of code and notebooks associated with transcriptomics workflows.