BoettigerLab
We use quantitative high-resolution imaging to study gene regulation during animal development.
Stanford UniversityDevelopmental Biology
Pinned Repositories
academicpages.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
ChromatinImaging
Super-resolution chromatin tracing 2018
fluidics-control
stand alone controller of automated fluid handling system.
Hafner2022
code associated with Hafner 2022 paper on cohesin and ctcf degron lines
Hal2
python3 version of Hazen's microscope control software "Hal"
ORCA-public
For automated processing of ORCA data
polychrom
fork of open2c/polychrom
Polycomb-ORCA-2022
Repository for analysis and simulation scripts associated with our work on how Polycomb factors shape 3D organization of hox-gene clusters
protocols
sox9-ORCA-2022
BoettigerLab's Repositories
BoettigerLab/ORCA-public
For automated processing of ORCA data
BoettigerLab/polychrom
fork of open2c/polychrom
BoettigerLab/Hafner2022
code associated with Hafner 2022 paper on cohesin and ctcf degron lines
BoettigerLab/Hal2
python3 version of Hazen's microscope control software "Hal"
BoettigerLab/Polycomb-ORCA-2022
Repository for analysis and simulation scripts associated with our work on how Polycomb factors shape 3D organization of hox-gene clusters
BoettigerLab/protocols
BoettigerLab/sox9-ORCA-2022
BoettigerLab/academicpages.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
BoettigerLab/ChromatinImaging
Super-resolution chromatin tracing 2018
BoettigerLab/fluidics-control
stand alone controller of automated fluid handling system.
BoettigerLab/matlab-storm
Tools for STORM analysis in Matlab. This is a fork of the matlab-storm from ZhuangLab
BoettigerLab/microscope-control
updated branch of the storm-control / Hal software
BoettigerLab/model-transcription-looping
Source-code for simulations and analyses of transcription-looping
BoettigerLab/nanoscope-control
new version of Hal microscope control software (previously storm-control)
BoettigerLab/Pitx1-ORCA-2023
Code for simulations and figures for our work on Pitx1
BoettigerLab/scopeTest
BoettigerLab/SEclustering-2024
Software and scripts for our work on super-enhancer clustering in mouse embryonic stem cells
BoettigerLab/tutorials