BokaiZhu

BokaiZhu's Stars

• sggao/CellSNAP

  CellSNAP: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data

  Language:Jupyter Notebook9

• rwnull/insitu_probe_generator

  Generate HCR-style Probe Pairs for mRNA visualization

  Language:Python338

• BokaiZhu/microbiomeFISH

  A protocol for designing oligos for microbiome samples

  Language:R1

• Feanor007/MESA

  A python package for Multiomics and Ecological Spatial Analysis (MESA)

  Language:Jupyter Notebook5

• SizunJiangLab/Hodgkin_EBV_MIBI

  Language:R1

• statOmics/tradeSeq

  TRAjectory-based Differential Expression analysis for SEQuencing data

  Language:HTML23727

• shuxiaoc/mario-py

  MARIO: single-cell proteomic data matching and integration using both shared and distinct features

  Language:Jupyter Notebook212

• angelolab/maldi-tools

  Tools for extracting MALDI TIMS TOF 2 Data

  Language:Python1

• anazalea/pySankey

  create sankey diagrams with matplotlib

  Language:Jupyter Notebook24795

• shuxiaoc/maxfuse

  Language:Jupyter Notebook408

• NHPatterson/wsireg

  multimodal whole slide image registration in a graph structure

  Language:Python777

• satijalab/seurat

  R toolkit for single cell genomics

  Language:R2.2k902

• angelolab/toffy

  Scripts for interacting with and generating data from the commercial MIBIScope

  Language:Jupyter Notebook103

• labsyspharm/redseapy

  Language:Python5

• BlakeRMills/MetBrewer

  Color palette package in R inspired by works at the Metropolitan Museum of Art in New York

  Language:R1.1k78

• lkeren/MIBIAnalysis

  Low level analysis for MIBI images

  Language:MATLAB105

• Nanostring-Biostats/CellProfileLibrary

  2412