Borealis BioModeling
Open-source and custom tools for biomodeling, simulation, and data analysis.
United States of America
Pinned Repositories
.github
aurora-biomodeling-app
Python-based web app for biomodel construction, simulation, and analysis.
aurora-pkpd
Open Python Web App for Pharmcological Modeling and Analysis
GAlibrate
Parameter estimation and model calibration using Genetic Algorithm optimization in Python.
pharmacodynamic-response-models
Collection of pharmacodynamic response models, including dose-response, inhibitor-response, and various receptor-response models that can be fit to response data.
pyNCA
Non-compartmental PK analysis in Python
pysb-fit
Tools to help automate PySB model calibration using a style similar to scikit-learn models.
pysb-jlsimulator
Julia-based simulator(s) for PySB models using tools like Catalyst.jl and PyJulia.
pysb-pkpd
PySB add-on providing domain-specific macros and models for empirical and mechanistic PK/PD modeling.
pysb-units
PySB add-on providing utilities to add units to models and perform dimensional analysis.
Borealis BioModeling's Repositories
Borealis-BioModeling/pysb-units
PySB add-on providing utilities to add units to models and perform dimensional analysis.
Borealis-BioModeling/.github
Borealis-BioModeling/aurora-biomodeling-app
Python-based web app for biomodel construction, simulation, and analysis.
Borealis-BioModeling/aurora-pkpd
Open Python Web App for Pharmcological Modeling and Analysis
Borealis-BioModeling/GAlibrate
Parameter estimation and model calibration using Genetic Algorithm optimization in Python.
Borealis-BioModeling/pharmacodynamic-response-models
Collection of pharmacodynamic response models, including dose-response, inhibitor-response, and various receptor-response models that can be fit to response data.
Borealis-BioModeling/pyNCA
Non-compartmental PK analysis in Python
Borealis-BioModeling/pysb-fit
Tools to help automate PySB model calibration using a style similar to scikit-learn models.
Borealis-BioModeling/pysb-jlsimulator
Julia-based simulator(s) for PySB models using tools like Catalyst.jl and PyJulia.
Borealis-BioModeling/pysb-pkpd
PySB add-on providing domain-specific macros and models for empirical and mechanistic PK/PD modeling.
Borealis-BioModeling/PySB-Models
A repository of mathematical models of biological systems that are encoded using PySB.
Borealis-BioModeling/radioligand-therapy-model
Semi-mechanistic PK/PD model of radioligand therapy implemented in PySB with pysb-pkpd and pysb-units.