BouchardLab/pyuoi

Issues

• Numpy > 1.20 leads to np.int error

  #213 opened a year ago by mckenziephagen
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• Cython>0.29 prevents install from source

  #214 opened a year ago by mckenziephagen
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• Add support for class weights in logistic regression

  #208 opened 3 years ago by JesseLivezey
  1

• numpy ValueError from lbfgs._lowlevel

  #212 opened 3 years ago by jihyunbak
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• Expose `tol` in UoI Lasso model

  #197 opened 3 years ago by JesseLivezey
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• Add "parameter tips" page to docs

  #203 opened 4 years ago by JesseLivezey
  2

• Index zeros rather than mask in BFGS for multiclass logistic with unshared support.

  #198 opened 4 years ago by JesseLivezey
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• Update imports from sklearn to account for new linear_model organization

  #199 opened 4 years ago by pssachdeva
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• Multi-output

  #196 opened 4 years ago by briandesilva
  2

• Add sphinx gallery to repo

  #150 opened 5 years ago by ajtritt
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• add PyUoI to conda

  #82 opened 5 years ago by ajtritt
  1

• Do some input validation on the mpi_utils functions otherwise they may hang with no errors.

  #94 opened 5 years ago by JesseLivezey
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• add PyUoI to PyPI

  #81 opened 5 years ago by ajtritt
  2

• Check if UoI Poisson correctly handles cases where the response variable is zero in all samples

  #113 opened 5 years ago by pssachdeva
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• Use MPI to parallelize fits in decomposition

  #176 opened 5 years ago by JesseLivezey
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• UoI linear_model fit function should be split into a selection and estimation function

  #68 opened 6 years ago by pssachdeva
  1

• Improve the OW-LBFGS implementation

  #96 opened 5 years ago by JesseLivezey
  1

• Interaction between warm_start fix and contiguous data array

  #75 opened 5 years ago by JesseLivezey
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• missing source file

  #102 opened 5 years ago by ajtritt
  1

• Update main README.md

  #155 opened 6 years ago by JesseLivezey
  1

• Information Criteria using mean log-likelihood rather than total log-likelihood

  #164 opened 6 years ago by pssachdeva
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• Examples (linear_model) Documentation

  #133 opened 6 years ago by pssachdeva
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• Examples (decomposition) Documentation

  #134 opened 6 years ago by pssachdeva
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• Background Documentation on NMF

  #136 opened 6 years ago by pssachdeva
  2

• "test_UoI_NMF_fit_tranform" test sometimes failes on python 3.5

  #125 opened 6 years ago by JesseLivezey
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• API Documentation Section

  #132 opened 6 years ago by pssachdeva
  1

• Remove Makefile?

  #99 opened 6 years ago by JesseLivezey
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• Use pytest parametrize rather than loops.

  #100 opened 6 years ago by JesseLivezey
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• Installation Doc Page

  #131 opened 6 years ago by pssachdeva
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• Update default arguments

  #138 opened 6 years ago by pssachdeva
  1

• Community Guidelines

  #135 opened 6 years ago by pssachdeva
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• Remove Python2 compatibility

  #130 opened 6 years ago by pssachdeva
  1

• MPI Documentation

  #137 opened 6 years ago by pssachdeva
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• Stability selection in CUR

  #89 opened 6 years ago by pssachdeva
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• Make AIC sensible for in/out of sample

  #111 opened 6 years ago by JesseLivezey
  1

• MPI broadcast message sizes don't match

  #122 opened 6 years ago by MiaAltieri
  9

• fit_intercept = False should be passed into selection_lm and estimation_lm

  #119 opened 6 years ago by akumar01
  2

• What is a sensible range for logistic regression L1 parameters?

  #105 opened 6 years ago by JesseLivezey
  1

• Mark tests as fast/slow

  #117 opened 6 years ago by ajtritt
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• Fix the warnings in Travis during elasticnet test

  #109 opened 6 years ago by pssachdeva
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• Test and fix one-vs-rest logistic regression.

  #95 opened 6 years ago by JesseLivezey
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• Check normalization by the number of samples

  #103 opened 6 years ago by JesseLivezey
  1

• Make sure the normalize parameter does what is intended.

  #88 opened 6 years ago by JesseLivezey
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• train_test_split uses selection_frac in the estimation module rather than estimation_frac

  #90 opened 6 years ago by pssachdeva
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• Simplify input/output dimensionality in linear_model

  #97 opened 6 years ago by pssachdeva
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• UoI linear_model models should be able to do things like predict, score, etc.

  #91 opened 6 years ago by JesseLivezey
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• UoI ElasticNet needs to import numpy

  #77 opened 6 years ago by akumar01
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• UoI Logistic Regression does not calculate an intercept

  #79 opened 6 years ago by pssachdeva
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• score_predictions needs to accept the design and response matrices in order to properly generalize across classes

  #76 opened 6 years ago by pssachdeva
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• UoI Linear Model should have different hyperparameters denoting the fraction of data for selection and estimation bootstraps

  #67 opened 6 years ago by pssachdeva
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