Pinned Repositories
awesome-single-cell
List of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Awesome-WSL
Awesome list dedicated to Windows Subsystem for Linux
bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
In-depth-NGS-Data-Analysis-Course
Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.
kallisto
Near-optimal RNA-Seq quantification
kimlab
RNA-seq-analysis
RNAseq analysis notes from Ming Tang
rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
RSEM
RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments
Bpar1's Repositories
Bpar1/awesome-single-cell
List of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Bpar1/bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
Bpar1/RNA-seq-analysis
RNAseq analysis notes from Ming Tang
Bpar1/Awesome-WSL
Awesome list dedicated to Windows Subsystem for Linux
Bpar1/In-depth-NGS-Data-Analysis-Course
Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.
Bpar1/kallisto
Near-optimal RNA-Seq quantification
Bpar1/kimlab
Bpar1/rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
Bpar1/RSEM
RSEM: accurate quantification of gene and isoform expression from RNA-Seq data
Bpar1/salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments
Bpar1/SARTools
Statistical Analysis of RNA-Seq Tools
Bpar1/single-cell-tutorial
Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
Bpar1/sleuth
Differential analysis of RNA-Seq
Bpar1/stringtie
Transcript assembly and quantification for RNA-Seq
Bpar1/tximport
Import and summarize transcript-level estimates for gene-level analysis