BrainOdyssey2050/Pipline

Neuroscience Signal Processing Pipline V0.1

DeepLabCut-in-1-hour

• 本notebook tutorial为在线教学视频《一小时入门DeepLabCut》的配套代码示例

  https://space.bilibili.com/3786101/channel/detail?cid=181474

• 请将本notebook上传到google drive，然后用google colab打开。具体如何使用，请参见视频教程。

• 测试视频 m3v1mp3.mp4 源自

  https://github.com/DeepLabCut/DeepLabCut/tree/master/examples/openfield-Pranav-2018-10-30/videos

Kilosort1

Note: the preview is failed due to the large size of the notes. Please download them directly if needed.

• Overview

• Simulated data generation

  Note | Video tutorial

• Template initialization

  Note

• Template matching

  Note

• Performance evaluation

  Note | Video tutorial

• Phy

• Is Kilosort reliable?

Tetrode-based signal processing

• Framework

Neural Decoding

1. Possion Process-based spike train generation

• Code

2. Pair-wise correlation and dimension reduction

• Note

3. Cell assembly analysis by Dupret

• Note

4. Matrix Decomposition

• Note | Video tutorial

我的CS笔记

• Note