BrettJSettle
Computer scientist with experience in biology labs at UCI (@flika-org) and UCSD (@cytoscape)
GoogleSan Jose
Pinned Repositories
BeamSplitter
Beam Splitter plugin for flika
DBScan
Perform a Density Based Scan on a 2 or 3-dimensional set of coordinates
DriftCorrection
Correct for drift in cell movies by analyzing shift over time.
family_business
Family Business card game and website
GalvoController
Controller for 2D galvo laser control
GlobalAnalysisPlugin
Global Analysis plugin for FLIKA program. Fit user-drawn regions of interest to polynomials for rise-fall time calculation.
NanotubeDetection
Nanotube detection plugin for Flika. Uses filtering techniques to find straight tubules in an image
sharks_ice_api
REST API for Solar4America Sharks Ice Adult Hockey League.
cytoscape
Cytoscape: an open source platform for network analysis and visualization
flika
An interactive image processing program for biologists written in Python.
BrettJSettle's Repositories
BrettJSettle/sharks_ice_api
REST API for Solar4America Sharks Ice Adult Hockey League.
BrettJSettle/GalvoController
Controller for 2D galvo laser control
BrettJSettle/DBScan
Perform a Density Based Scan on a 2 or 3-dimensional set of coordinates
BrettJSettle/NanotubeDetection
Nanotube detection plugin for Flika. Uses filtering techniques to find straight tubules in an image
BrettJSettle/BeamSplitter
Beam Splitter plugin for flika
BrettJSettle/DriftCorrection
Correct for drift in cell movies by analyzing shift over time.
BrettJSettle/family_business
Family Business card game and website
BrettJSettle/GlobalAnalysisPlugin
Global Analysis plugin for FLIKA program. Fit user-drawn regions of interest to polynomials for rise-fall time calculation.
BrettJSettle/glue_synapse
Glueviz synapse analysis tool
BrettJSettle/LocalizationAnalysis
BrettJSettle/MotilityTracking
Analyze the motility of active cell sites imported by a bin file from Origin Analysis
BrettJSettle/PathwayStudioImporter
Cytoscape Importer app for Pathway Studio files
BrettJSettle/pyFLIKA
An algorithm for automated detection, localization and measurement of local calcium signals from camera-based imaging. This project has moved to https://github.com/flika-org/flika. Follow this link to see the latest version.
BrettJSettle/RedWall
Reddit browser, mainly for wallpapers, with fullscreen functionality. Caches images in temp file to display them full screen in slideshow
BrettJSettle/sharks_ice_frontend
Retrying a ReactJS sharks ice webapp for viewing upcoming games
BrettJSettle/SynapseAnalysis
Synapse Activity Program based on BioDocks Library