Integration of Brkraw into Neurodesktop
timwahoo opened this issue · 3 comments
Is your feature request related to a problem? Please describe.
Adding brkraw into the neurodesktop environment for simpler integration with other MRI image processing software.
Neurodesktop is a plug-and-play, browser-accessible, containerized data analysis environment.
https://github.com/NeuroDesk/neurodesktop
Describe the solution you'd like
Easier access to brkraw and integration of other advanced MRI tools in the same environment. However, there is a problem with reading the PVdataset files in the neurodesktop singularity/docker environment.
Additional context
I have requested brkraw v3.11.0 be added to neurodesktop. However, there are issues with using the software on their platform.
Is it only showed on neurodesktop? or for that particular dataset?
This is a problem that exists on neurodesktop. I only tried it with one dataset (zip and unzipped) with the same results. I can try it again with other datasets.
I suspect the issue could be file mounting or file encryption through the docker or singularity.
Hi @dvm-shlee,
I just tried it with all the datasets and it only seems to fail for datasets obtained from Paravision 360, brkraw works fine with PV7 and PV6 datasets on neurodesktop!
We figured out the problem, it was an issue with version.