timwahoo

Medical Imaging Researcher

Pinned Repositories

afni
Official AFNI source and documentation
Language:C00
ANTs
Advanced Normalization Tools (ANTs)
Language:C++00
Anything-3D
Segment-Anything + 3D. Let's lift anything to 3D.
Language:Python00
APART-QSM
An iterative magnetic susceptibility sources separation method
Language:MATLAB00
apptainer
Apptainer: Application containers for Linux
Language:Go00
ASPIRE
MRI phase combination algorithms for array-coils
Language:MATLAB00
Auto-GPT
An experimental open-source attempt to make GPT-4 fully autonomous.
Language:Python00
AVIONIC
Accelerated Variational dynamic MRI reconstruction
Language:C++00
B1correction-toolkit
This toolbox was designed with the purpose of correcting for B1 inhomogeneities inherent of transmit-receive (transceive) surface RF coils used in magnetic resonance imaging.
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neurocontainers
The containers can be used in combination with our transparent singularity or neurocommand tool, that wrap the executables inside a container to make them easily available for pipelines
Language:Shell10

timwahoo's Repositories

timwahoo/neurocontainers
The containers can be used in combination with our transparent singularity or neurocommand tool, that wrap the executables inside a container to make them easily available for pipelines
Language:Shell10
timwahoo/afni
Official AFNI source and documentation
Language:C00
timwahoo/apptainer
Apptainer: Application containers for Linux
Language:Go00
timwahoo/bart
BART: Toolbox for Computational Magnetic Resonance Imaging
Language:C00
timwahoo/bartpy
Python wrappers for external BART computational imaging tools and internal libraries
Language:C
timwahoo/brkraw
BrkRaw: A comprehensive tool to access raw Bruker Biospin MRI data
Language:Python
timwahoo/brkraw-snippets
BrkRaw Snippets: Modular Extensions for BrkRaw
Language:Python
timwahoo/chi-separation
Code for magnetic susceptibility source separation
timwahoo/CoSimPy
Python electromagnetic cosimulation library
timwahoo/Docker-OSX
Run macOS VM in a Docker! Run near native OSX-KVM in Docker! X11 Forwarding! CI/CD for OS X Security Research! Docker mac Containers.
timwahoo/finufft
Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3
timwahoo/gadgetron
Gadgetron - Medical Image Reconstruction Framework
Language:C++
timwahoo/gpuNUFFT
gpuNUFFT - An Open-Source GPU Library for 3D Gridding with Direct Matlab and Python Interface
timwahoo/hackbat
Hackbat repository
timwahoo/ismrmrd
ISMRM Raw Data Format
timwahoo/KomaMRI.jl
Koma is a Pulseq-compatible framework to efficiently simulate Magnetic Resonance Imaging (MRI) acquisitions. The main focus of this package is to simulate general scenarios that could arise in pulse sequence development.
timwahoo/LTSpice_on_Linux_Ubuntu__How_to_install_and_use
Make great analog designs
timwahoo/mirt
Michigan Image Reconstruction Toolbox (MIRT) - Matlab version
timwahoo/MIRT.jl
MIRT: Michigan Image Reconstruction Toolbox (Julia version)
Language:Julia
timwahoo/monte-carlo-simulation-recipes
Recipes of Monte Carlo simulations in Fieremans and Lee, NeuroImage 2018
timwahoo/MRIReco.jl
Julia Package for MRI Reconstruction
Language:Julia
timwahoo/MriResearchTools.jl
Specialized tools for MRI
Language:Julia
timwahoo/nighres
Processing tools for high-resolution neuroimaging
timwahoo/openpilot
openpilot is an open source driver assistance system. openpilot performs the functions of Automated Lane Centering and Adaptive Cruise Control for 250+ supported car makes and models.
timwahoo/pulseq
Open source framework for pulse sequences
Language:MATLAB
timwahoo/python-ismrmrd-server
Example client/server example for the streaming ISMRM Raw Data protocol
timwahoo/reproduce-l-s-dynamic-mri
Matlab code for reproducing 2019 IEEE Tr. Comp. Im. paper "Efficient Dynamic Parallel MRI Reconstruction for the Low-Rank Plus Sparse Model" by Claire Lin
timwahoo/sepia
Matlab GUI pipeline application for quantitative susceptibility mapping (QSM)
Language:MATLAB
timwahoo/timwahoo
Config files for my GitHub profile.
timwahoo/twixtools
python file reader/writer for Siemens MRI raw data + compression utility
Language:Python