Pinned Repositories
afni
Official AFNI source and documentation
ANTs
Advanced Normalization Tools (ANTs)
Anything-3D
Segment-Anything + 3D. Let's lift anything to 3D.
APART-QSM
An iterative magnetic susceptibility sources separation method
apptainer
Apptainer: Application containers for Linux
ASPIRE
MRI phase combination algorithms for array-coils
astexplorer
A web tool to explore the ASTs generated by various parsers.
Auto-GPT
An experimental open-source attempt to make GPT-4 fully autonomous.
AVIONIC
Accelerated Variational dynamic MRI reconstruction
neurocontainers
The containers can be used in combination with our transparent singularity or neurocommand tool, that wrap the executables inside a container to make them easily available for pipelines
timwahoo's Repositories
timwahoo/Anything-3D
Segment-Anything + 3D. Let's lift anything to 3D.
timwahoo/APART-QSM
An iterative magnetic susceptibility sources separation method
timwahoo/ASPIRE
MRI phase combination algorithms for array-coils
timwahoo/bart-webinars
Landing page for BART Webinars
timwahoo/bart-workshop
Material for BART demos.
timwahoo/brainextractor
A re-implementation of FSL's Brain Extraction Tool in Python
timwahoo/BrainNetClass
timwahoo/brkraw-bart
BART Toolbox integration for Brkraw
timwahoo/brkraw_tutorials
Repository of the BrkRaw Python API tutorials with the Jupyter Notebook
timwahoo/Conjugate-Gradient
Painless conjugate gradient notebooks
timwahoo/extractBrain
Matlab function/app to extract rodent brain in MRI data based on PCNN algorithm.
timwahoo/flip-angle-optimization
Optimisation of flip angles for optimising SNR for a given PSF in multi-pulse experiments, including SPLICE
timwahoo/Interactive-QSM-ISMRM-educational-talk
This interactive notebook illustrates concepts from my QSM educational talk at ISMRM 2021
timwahoo/JHUKKI_QSM_Toolbox
timwahoo/labelme-with-segment-anything
Image Polygonal Annotation with Python (polygon, rectangle, circle, line, point and image-level flag annotation).
timwahoo/lrslibrary
Low-Rank and Sparse Tools for Background Modeling and Subtraction in Videos
timwahoo/MarzWorkbench
FreeCAD Workbench for guitar design
timwahoo/mrf
An end to end, vendor neutral MRF package
timwahoo/mri-sim-py
Magnetic Resonance Imaging (MRI) Simulation Code in Python
timwahoo/MRSignalsSeqs
Stanford University Rad229 Class Code: MRI Signals and Sequences
timwahoo/neurodesktop
The plug-and-play, browser-accessible, containerised data analysis environment.
timwahoo/NiftySeg
timwahoo/NN-SVG
Publication-ready NN-architecture schematics.
timwahoo/QSM
Hongfu Sun's MATLAB codes for QSM reconstruction pipeline.
timwahoo/QUIT
A set of tools for processing Quantitative MR Images
timwahoo/recon
Primal-Dual Solver for Inverse Problems
timwahoo/RodentMRISkullStripping3D
timwahoo/segment-anything-gui
A matplotlib GUI to run the Segment Anything Model
timwahoo/singularity
Singularity has been renamed to Apptainer as part of us moving the project to the Linux Foundation. This repo has been persisted as a snapshot right before the changes.
timwahoo/t2shuffling-support
Demonstration code for the MRM manuscript, "T2 Shuffling: Sharp, Multi-Contrast, Volumetric Fast Spin-Echo Imaging"