Keep getting "TypeError: argument of type 'int' is not iterable"
Closed this issue · 5 comments
Hi there,
Installed Brkraw on my Window10 PC. The installation was fine. But when running it, I keep getting the errors as below. Can anybody help? Thx a lot!
I have a full raw dataset in the path E:\raw
Thx for the super quick reply!
I carefully read the #49 and #80 and #66. Then, I downloaded the dataset in #66. It works well.
So I tried the other data from my scanner. Found that some of them works, but some doesn't. My sanner use PV6.0.1. And I uploaded the "good" data here https://drive.google.com/file/d/1BMlb3cluK-9N8NUsnx_rmHn10MoiL1q6/view?usp=share_link.
And the "bad" data is here https://drive.google.com/file/d/1U1PgvzXUhDlVpi9SCcPjB909J_yVzBd4/view?usp=share_link.
Could anyone help test and tell why? I really appreciate it!
interesting, I get the same error on one of my dataset with brkraw --version 0.3.7
When I move to v0.3.8-rc1, I get a different issue ( ac_proc = visu_pars.parameters['VisuAcquisitionProtocol'] which I will raise as an issue if I can't solve it)
Interestingly, my student with version 0.3.6 (and python 3.7.9, anadonca 3 2021.05 go through my difficult without issue.
See what kind of error when you pip install git+https://github.com/brkraw/brkraw to get the latest version of brkrw
so, did some digging.
with latest version installed from github with pip, I had the following error (see my comment above)
Traceback (most recent call last): File "/home/traaffneu/joagra/.conda/envs/bruker_new/bin/brkraw", line 8, in <module> sys.exit(main()) File "/home/traaffneu/joagra/.conda/envs/bruker_new/lib/python3.7/site-packages/brkraw/scripts/brkraw.py", line 321, in main if not is_localizer(dset, scan_id, reco_id): File "/home/traaffneu/joagra/.conda/envs/bruker_new/lib/python3.7/site-packages/brkraw/scripts/brkraw.py", line 713, in is_localizer ac_proc = visu_pars.parameters['VisuAcquisitionProtocol'] KeyError: 'VisuAcquisitionProtocol'
which seemed to be caused by dwi reconstructed imaged (pdata/1 and pdata/2). It gets corrected when I remove the PV6 reco.
But at least the error message whichi got with brkraw 0.3.7 which was the same as @johnjiang406 got solved. if @johnjiang406 confirms, I think we can close this issue (and maybe open one about brkraw running into issues with reconstruction)