grandjeanlab
Laboratory interested in brain function under stress. Functional neuroimaging in mice.
Donders Institute, Radboudumc, Nijmegen,
Pinned Repositories
awake
awake task-free multi-species, multi-modality, multi-center study
INCF_preclinical
Code examples for the Practical guide to overcome the reproducibility crisis in small animal neuroimaging: workflows, tools, and repositories
mergeallen
code snippet to merge allen institute brain atlas rois
MouseANTs
modified ANTs shell scripts adapted to the mouse
MouseMRIPrep
Scripts to preprocess mouse MRI/fMRI/dMRI
MultiRat
A Rat fMRI multi-center study
multirat_se
multiverse
shank3mrs
MRS study in SHANK3 mcie.
StandardRat
A Rat fMRI standardized protocol
grandjeanlab's Repositories
grandjeanlab/MultiRat
A Rat fMRI multi-center study
grandjeanlab/StandardRat
A Rat fMRI standardized protocol
grandjeanlab/MouseMRIPrep
Scripts to preprocess mouse MRI/fMRI/dMRI
grandjeanlab/awake
awake task-free multi-species, multi-modality, multi-center study
grandjeanlab/MouseANTs
modified ANTs shell scripts adapted to the mouse
grandjeanlab/multirat_se
grandjeanlab/INCF_preclinical
Code examples for the Practical guide to overcome the reproducibility crisis in small animal neuroimaging: workflows, tools, and repositories
grandjeanlab/mergeallen
code snippet to merge allen institute brain atlas rois
grandjeanlab/multiverse
grandjeanlab/shank3mrs
MRS study in SHANK3 mcie.
grandjeanlab/AIDAqc
An automated and simple tool for fast quality analysis of animal MRI
grandjeanlab/alpine-qtile
grandjeanlab/apptainer
misc apptainer def files for reproducible science
grandjeanlab/brkraw
BrkRaw: A comprehensive tool to access raw Bruker Biospin MRI data
grandjeanlab/grandjeanlab.github.io
grandjeanlab/Min16_module
Minor 16 module for the BMS bachelor
grandjeanlab/MouseFIX
Modified FSL FIX code to work with mouse
grandjeanlab/mouse_asymmetry
grandjeanlab/quarto-nvim-kickstarter
A neovim configuration to get you up to speed
grandjeanlab/RABIES
Automated fMRI preprocessing pipeline adapted for rodent images.
grandjeanlab/sop
standard operation procedures in the lab
grandjeanlab/swaydotfiles
sway dotfiles
grandjeanlab/vim-colemak-dh
Colemak-dh key mappings for vim