grandjeanlab
Laboratory interested in brain function under stress. Functional neuroimaging in mice.
Donders Institute, Radboudumc, Nijmegen,
Pinned Repositories
AIDAqc
An automated and simple tool for fast quality analysis of animal MRI
awake
awake task-free multi-species, multi-modality, multi-center study
INCF_preclinical
Code examples for the Practical guide to overcome the reproducibility crisis in small animal neuroimaging: workflows, tools, and repositories
mergeallen
code snippet to merge allen institute brain atlas rois
MouseANTs
modified ANTs shell scripts adapted to the mouse
MouseMRIPrep
Scripts to preprocess mouse MRI/fMRI/dMRI
MultiRat
A Rat fMRI multi-center study
multirat_se
shank3mrs
MRS study in SHANK3 mcie.
StandardRat
A Rat fMRI standardized protocol
grandjeanlab's Repositories
grandjeanlab/MultiRat
A Rat fMRI multi-center study
grandjeanlab/StandardRat
A Rat fMRI standardized protocol
grandjeanlab/MouseMRIPrep
Scripts to preprocess mouse MRI/fMRI/dMRI
grandjeanlab/awake
awake task-free multi-species, multi-modality, multi-center study
grandjeanlab/MouseANTs
modified ANTs shell scripts adapted to the mouse
grandjeanlab/multirat_se
grandjeanlab/INCF_preclinical
Code examples for the Practical guide to overcome the reproducibility crisis in small animal neuroimaging: workflows, tools, and repositories
grandjeanlab/mergeallen
code snippet to merge allen institute brain atlas rois
grandjeanlab/shank3mrs
MRS study in SHANK3 mcie.
grandjeanlab/AIDAqc
An automated and simple tool for fast quality analysis of animal MRI
grandjeanlab/alpine-qtile
grandjeanlab/apptainer
misc apptainer def files for reproducible science
grandjeanlab/brkraw
BrkRaw: A comprehensive tool to access raw Bruker Biospin MRI data
grandjeanlab/grandjeanlab.github.io
grandjeanlab/Min16_module
Minor 16 module for the BMS bachelor
grandjeanlab/MouseFIX
Modified FSL FIX code to work with mouse
grandjeanlab/mouse_asymmetry
grandjeanlab/multiverse
grandjeanlab/quarto-nvim-kickstarter
A neovim configuration to get you up to speed
grandjeanlab/RABIES
Automated fMRI preprocessing pipeline adapted for rodent images.
grandjeanlab/sop
standard operation procedures in the lab
grandjeanlab/swaydotfiles
sway dotfiles
grandjeanlab/vim-colemak-dh
Colemak-dh key mappings for vim