Java Mass Spectrometry Analyzer 2 (JMSA 2) is a free software to analyse of mass spectrometry to microorganism identification.
The software use MALDITOF mass spectra data generated by flex series (Bruker). There is a default algorithm that compute the similarity between spectres using the peaklist (peaks of spectres) information.
This project have the follow libraries as dependencies:
You can access the last release and check the wiki project for more details.
- Read MALDITOF mass spectra data generated by flex series (Bruker)
- Manage and annotate spectra informations
- Hierarchical clustering of spectres and Newick file exportation
- Similar spectres search (based on Needleman–Wunsch algorithm)
- Super Spectra generation (merge of similar spectres duplications)
- Spectres Similar Matrix
- Spectres visualization