/jmsa

Java Mass Spectrometry Analyzer 2 (JMSA 2) is a free software to analyse of mass spectrometry to microorganism identification.

Primary LanguageJavaBSD 3-Clause "New" or "Revised" LicenseBSD-3-Clause

JMSA 2

Java Mass Spectrometry Analyzer 2 (JMSA 2) is a free software to analyse of mass spectrometry to microorganism identification.

The software use MALDITOF mass spectra data generated by flex series (Bruker). There is a default algorithm that compute the similarity between spectres using the peaklist (peaks of spectres) information.

This project have the follow libraries as dependencies:

How to use

You can access the last release and check the wiki project for more details.

Features

  • Read MALDITOF mass spectra data generated by flex series (Bruker)
  • Manage and annotate spectra informations
  • Hierarchical clustering of spectres and Newick file exportation
  • Similar spectres search (based on Needleman–Wunsch algorithm)
  • Super Spectra generation (merge of similar spectres duplications)
  • Spectres Similar Matrix
  • Spectres visualization