Buddha7771

Buddha7771's Stars

• biotite-dev/biotite

  A comprehensive library for computational molecular biology

  Language:Python645101

• chaidiscovery/chai-lab

  Chai-1, SOTA model for biomolecular structure prediction

  Language:Python1.1k134

• ml4bio/RNA-FM

  RNA foundation model

  Language:Jupyter Notebook19318

• lbcb-sci/RiNALMo

  RiboNucleic Acid (RNA) Language Model

  Language:Python589

• levinthal/Pallatom

  Language:Python463

• Bhattacharya-Lab/ProRNA3D-single

  Single-sequence protein-RNA complex structure prediction with biological language models

  Language:Python6

• uw-ipd/RoseTTAFold2NA

  RoseTTAFold2 protein/nucleic acid complex prediction

  Language:Python32272

• ml4bio/RhoFold

  RhoFold+: Accurate RNA 3D structure prediction using a language model-based deep learning approach

  Language:Python266

• lucidrains/rectified-flow-pytorch

  Implementation of rectified flow and some of its followup research / improvements in Pytorch

  Language:Python1612

• DasLab/CASP15_RNA_EM

  Language:Jupyter Notebook3

• DasLab/casp-rna

  Pipeline used to assess RNA in CASP15

  Language:Jupyter Notebook31

• CompVis/stable-diffusion

  A latent text-to-image diffusion model

  Language:Jupyter Notebook67.7k10.1k

• rish-16/rna-backbone-design

  Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design

  Language:Python294

• eternagame/EternaFold

  Improving RNA structure prediction through multitask learning on diverse crowdsourced data.

  Language:C++4810

• bjing2016/alphaflow

  AlphaFold Meets Flow Matching for Generating Protein Ensembles

  Language:Python34546

• BradyAJohnston/MolecularNodes

  Toolbox for molecular animations in Blender, powered by Geometry Nodes.

  Language:Python88883

• marc-harary/kirigami

  Kirigami: RNA secondary structure prediction via deep learning

  Language:Python31

• Wangchentong/Proteus

  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.

  Language:Python664

• divnori/rnaflow

  RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching

  Language:Python432

• aqlaboratory/genie2

  Protein structure diffusion model for unconditional protein generation and motif scaffolding

  Language:Python11316

• google-deepmind/alphafold

  Open source code for AlphaFold.

  Language:Python12.3k2.2k

• lucidrains/alphafold3-pytorch

  Implementation of Alphafold 3 in Pytorch

  Language:Python940110

• aqlaboratory/openfold

  Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

  Language:Python2.7k518

• chaitjo/geometric-rna-design

  gRNAde: Geometric Deep Learning for 3D RNA inverse design

  Language:Jupyter Notebook14612

• ml4bio/RiboDiffusion

  ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models

  Language:Python275

• jasonkyuyim/multiflow

  Language:Python1065

• nobiastx/diffusion-conformer

  Diffusion-based molecule conformer generation

  Language:Python346

• lucidrains/denoising-diffusion-pytorch

  Implementation of Denoising Diffusion Probabilistic Model in Pytorch

  Language:Python8k1k

• lenscloth/GRPE

  Official Implementation of "GRPE: Relative Positional Encoding for Graph Transformer"

  Language:Python547

• lucidrains/invariant-point-attention

  Implementation of Invariant Point Attention, used for coordinate refinement in the structure module of Alphafold2, as a standalone Pytorch module

  Language:Python1479