Sub-SBML is a Python based toolbox
Python toolbox to to create, edit, combine, and model interactions among multiple Systems Biology Markup Language (SBML) models.
Sub-SBML works with a “subsystem” architecture of modeling where a single SBML model can be contained within a subsystem.
Three major functionalities are developed in Sub-SBML that take advantage of this subsystem framework of modeling –
creating subsystems, combining multiple subsystems, and modeling interactions such as transport of molecules and input-output relationships among multiple subsystems.
Refer to the Wiki for more information.
To run - Go through tutorial files inside tutorials folder then check out some common examples in the examples folder. To check if different tools are working properly, run tests.
Contact : Ayush Pandey (apandet at caltech dot edu) for any feedback or suggestions.
- Source: https://github.com/BuildACell/subsbml
- Bug reports: https://github.com/buildacell/subsbml/issues
- Documentation: Coming Soon on: subsbml.readthedocs.io
Install the latest version of AutoReduce::
$ pip install subsbml
Install with all optional dependencies::
$ pip install subsbml[all]
Report any bugs that you find here.
You can also fork the repository on GitHub,
and the create a pull request (PR) with any changes. We welcome all changes, big or small, and we
will help you make the PR if you are new to git (just create a new issue)
Sub-SBML versions:
- 1.0.0 (beta release): To install run
pip install subsbml==1.0.0
Released under the BSD 3-Clause License (see LICENSE)
Copyright (c) 2020, Ayush Pandey. All rights reserved.