nci-webtools-dccps-seer

Getting Started

After cloning this repository, build the jpsurv development image (cbiitss/jpsurv:dev):

npm run build:image

To start the development server on Linux/macOS, use:

npm run start:dev

To start the development server on Windows, run the following in a non-powershell command prompt:

npm run start:msdev

After starting the container, JPSurv should be available at: http://localhost:9000/jpsurv.

docker ps
- To find the running container
docker logs -f CONTAINER
- Shows the log output
docker restart CONTAINER
- Restart the container.
- WARNING!!! Always restart after making a change to the R and Python code.

If you need to inspect the source for the JPSurv R package, extract the r-packages/JPSurv_R_package.tar.gz file (in the docker directory, run tar -xvf JPSurv_R_package.tar.gz)
Open JPSurvWrapper.R (if RStudio has the proper file associations, you can just click on the file)
Source File (click source button) to run all the functions contained in the file.
You cannot debug the R code from your browser. You must change the code, then restart the docker container (see above) to see your changes.