This is the code for the preprint Widespread variation in molecular interactions and regulatory properties among transcription factor isoforms https://www.biorxiv.org/content/10.1101/2024.03.12.584681v3
The python version used to produce the figures is listed in .python-version (3.8.13). pyenv can be used to install that specific version. The dependencies are listed in requirements.txt and can be installed with pip -r requirements.txt after setting up a virtual environment.
The supplementary data tables are available in supp/ or on the biorxiv page.
To run the notebooks, you will need to download the source data which are available here: https://zenodo.org/records/10957151
wget https://zenodo.org/records/10957151/files/TF_isoforms_paper_data_dir.tar.gz
tar -xzf TF_isoforms_paper_data_dir.tar.gz
Any original analysis should use the data from the supplementary tables rather than these source files.