Pinned Repositories
.github
issue templates
CDPHE-docker-builds
Docker builds for CDPHE pipelines and workflows.
CDPHE-Enterovirus
Workflows and scripts for the assembly and analysis of enterovirus whole genome sequencing.
CDPHE-influenza
Workflows and scripts for the assembly and analysis of influenza whole genome amplicon sequencing.
CDPHE-mpox
Workflows and scripts for the assembly and analysis of mpox whole genome sequencing.
CDPHE-publications
Repository of code used in CDPHE publications.
CDPHE-RSV
Workflows and scripts for the assembly and analysis of RSV whole genome tiled amplicon sequencing.
CDPHE-SARS-CoV-2
Workflows and scripts for the assembly and analysis of SARS-CoV-2 whole genome tiled amplicon sequencing.
utils_workflows
Useful workflows and tasks for CDPHE pipelines.
Colorado Department of Public Health and Environment Bioinformatics's Repositories
CDPHE-bioinformatics/CDPHE-SARS-CoV-2
Workflows and scripts for the assembly and analysis of SARS-CoV-2 whole genome tiled amplicon sequencing.
CDPHE-bioinformatics/CDPHE-influenza
Workflows and scripts for the assembly and analysis of influenza whole genome amplicon sequencing.
CDPHE-bioinformatics/CDPHE-RSV
Workflows and scripts for the assembly and analysis of RSV whole genome tiled amplicon sequencing.
CDPHE-bioinformatics/.github
issue templates
CDPHE-bioinformatics/CDPHE-docker-builds
Docker builds for CDPHE pipelines and workflows.
CDPHE-bioinformatics/CDPHE-Enterovirus
Workflows and scripts for the assembly and analysis of enterovirus whole genome sequencing.
CDPHE-bioinformatics/CDPHE-mpox
Workflows and scripts for the assembly and analysis of mpox whole genome sequencing.
CDPHE-bioinformatics/CDPHE-publications
Repository of code used in CDPHE publications.
CDPHE-bioinformatics/utils_workflows
Useful workflows and tasks for CDPHE pipelines.