Center for Eukaryotic Gene Regulation
The CEGR is composed of Cornell laboratories focused on understanding the mechanisms of gene regulation.
Cornell University - Ithaca, NY
Pinned Repositories
2018-Rossi_GenomeResearch
Genome-wide determinants of sequence-specific DNA binding of general regulatory factors
2018-Rossi_NatureCommunications
Simplified ChIP-exo and ChIP-seq assays
2021-Rossi_Nature
A high-resolution protein architecture of the budding yeast genome
GenoPipe
Toolkit for characterizing the genotype of NGS datasets
labtutorial
PughLab's Infrastructure and Software setup guides
plotter
Visualization tool to plot composites at reference points & regions of interest
scriptmanager
stencil
A web templating engine for visualizing and sharing life science datasets
stencil-galaxy_tools
Galaxy tools to reformat outputs before POSTing to Stencil Website
yep-trackhub
Center for Eukaryotic Gene Regulation's Repositories
CEGRcode/scriptmanager
CEGRcode/stencil
A web templating engine for visualizing and sharing life science datasets
CEGRcode/2021-Rossi_Nature
A high-resolution protein architecture of the budding yeast genome
CEGRcode/GenoPipe
Toolkit for characterizing the genotype of NGS datasets
CEGRcode/2018-Rossi_GenomeResearch
Genome-wide determinants of sequence-specific DNA binding of general regulatory factors
CEGRcode/2018-Rossi_NatureCommunications
Simplified ChIP-exo and ChIP-seq assays
CEGRcode/labtutorial
PughLab's Infrastructure and Software setup guides
CEGRcode/plotter
Visualization tool to plot composites at reference points & regions of interest
CEGRcode/cegrcode.github.io
Pugh Lab Website at Cornell.
CEGRcode/PCRPpipeline
Bioinformatic pipeline used to process PCRP datasets
CEGRcode/pegr-galaxy_tools
CEGRcode/pegr-ngs_pipeline
CEGRcode/stencil-galaxy_tools
Galaxy tools to reformat outputs before POSTing to Stencil Website
CEGRcode/cegr-yep-qcviz
Galaxy YEP Qc & Viz workflow invocation scripts and input datasets
CEGRcode/exo
:package: Command-line utilities for Yeast Epigenome Project.
CEGRcode/yep-trackhub
CEGRcode/2020-Badjatia_peroxide_stress
CEGRcode/2021-Lai_PCRP
CEGRcode/2022-Mittal_SAGA
CEGRcode/2022_EColi_John-Jabbar
CEGRcode/2023-Breugel_JournalXXXX
CEGRcode/2023-Krebs_BenzonaseSeq
Analysis for methods and protocol paper
CEGRcode/2024-Louder_Cell
CEGRcode/ChIP-QC-tools
CEGRcode/Galaxy_Install_Ansible
Ansible playbook to install galaxy
CEGRcode/Gallego_2019
CEGRcode/GenoPipe-docs
website and documentation for GenoPipe
CEGRcode/Mittal_2021_ChEC-seq
CEGRcode/PEGR-featureFiles
Repo containing genomic feature files linked to PEGR
CEGRcode/scriptmanager-docs
website and documentation for scriptmanager