Pinned Repositories
BQC19_Imputation_Panel
glimpse_pipeline
Pipeline for variant imputation in low depth sequencing data using GLIMPSE
HGDP_1KG_ancestry_inference
Regenie_nextflow
Pipeline implementation of Regenie
scripts
Various scripts
skills_test_2
skills_test_3
SV_calling_pipeline
vep_pipeline
Pipeline for variant annotation using Variant Effect Predictor (VEP)
WEGS_pipelines
Pipelines for SNVs and InDels calling (single sample and joint) in WEGS, WGS, and WES using GATK.
CERC Genomic Medicine's Repositories
CERC-Genomic-Medicine/scripts
Various scripts
CERC-Genomic-Medicine/skills_test_2
CERC-Genomic-Medicine/vep_pipeline
Pipeline for variant annotation using Variant Effect Predictor (VEP)
CERC-Genomic-Medicine/HGDP_1KG_ancestry_inference
CERC-Genomic-Medicine/skills_test_3
CERC-Genomic-Medicine/WEGS_pipelines
Pipelines for SNVs and InDels calling (single sample and joint) in WEGS, WGS, and WES using GATK.
CERC-Genomic-Medicine/glimpse_pipeline
Pipeline for variant imputation in low depth sequencing data using GLIMPSE
CERC-Genomic-Medicine/BQC19_Imputation_Panel
CERC-Genomic-Medicine/Regenie_nextflow
Pipeline implementation of Regenie
CERC-Genomic-Medicine/SV_calling_pipeline
CERC-Genomic-Medicine/AccessibilityMask
CERC-Genomic-Medicine/beagle_phasing
Nextflow pipeline around Beagle phasing/imputation tool
CERC-Genomic-Medicine/CARTaGENE_Imputation_Panel
CERC-Genomic-Medicine/CARTaGENE_PheWeb
A tool to build a website to browse hundreds or thousands of GWAS.
CERC-Genomic-Medicine/ExomePLUS_benchmark
CERC-Genomic-Medicine/RFMix2_local_ancesty
CERC-Genomic-Medicine/shapeit4_pipeline
Pipeline for genotype phasing using SHAPEIT4
CERC-Genomic-Medicine/skills_test_1
CERC-Genomic-Medicine/verifybam_pipeline
CERC-Genomic-Medicine/WEGS_paper
This repository contains source code for the tables and figures presented in the WEGS paper.
CERC-Genomic-Medicine/bravo_api
Server side data processing and retrieval endpoints for BRAVO
CERC-Genomic-Medicine/bravo_data_prep
Work flows and tools to create data that backs the BRAVO API.
CERC-Genomic-Medicine/CARTaGENE_flagship_paper
CERC-Genomic-Medicine/Phenotype_Filtering_Tool
CERC-Genomic-Medicine/ProgrammingClub