CERI-KRISP

africa-covid19-genomics

Invite only repo to share code, data and info to reproduce.

CholeraSeq

[ALPHA] stage pipeline

CLIMADE

SARS-Cov-2-Africa-dashboard

SARS-CoV-2-epidemic-in-Africa

Expanding Africa SARS-CoV-2 sequencing capacity in a fast evolving pandemic.

SARS_CoV_2_VOC_dissemination

SARSCoV2_Delta_South_Africa

Rapid replacement of the Beta variant by the Delta variant in South Africa

SARSCoV2_South_Africa_501Y_V2_B_1_351

Analysis of the 501Y_V2 SARS-CoV-2 variant

SARSCoV2_South_Africa_Omicron_BA4_BA5

within-host-diversity-manuscript-analysis-code

CERI-KRISP/africa-covid19-genomics

Invite only repo to share code, data and info to reproduce.

CERI-KRISP/CLIMADE

CERI-KRISP/within-host-diversity-manuscript-analysis-code

CERI-KRISP/SARS-Cov-2-Africa-dashboard

CERI-KRISP/SARS-CoV-2-epidemic-in-Africa

Expanding Africa SARS-CoV-2 sequencing capacity in a fast evolving pandemic.

CERI-KRISP/SARS_CoV_2_VOC_dissemination

CERI-KRISP/SARSCoV2_South_Africa_Omicron_BA4_BA5

CERI-KRISP/CholeraSeq

[ALPHA] stage pipeline

CERI-KRISP/efficient-SARS-CoV-2-pooled-testing-strategy-code

This repository is a set of scripts for Opentrons OT-2 pipetting robot

CERI-KRISP/SARSCoV2_Delta_South_Africa

Rapid replacement of the Beta variant by the Delta variant in South Africa

CERI-KRISP/SARSCoV2_South_Africa_501Y_V2_B_1_351

Analysis of the 501Y_V2 SARS-CoV-2 variant

CERI-KRISP/SARSCoV2_South_Africa_major_lineages

CERI-KRISP/WHO-AFRO-weekly-reports-on-public-health-emergencies-txt

This is a user friendly format (text) of the data from https://www.afro.who.int/health-topics/disease-outbreaks/outbreaks-and-other-emergencies-updates maintained by CERI-KRISP. All credits to the original data to WHO -AFRO

CERI-KRISP/CHIKV_Genomic_Senegal_2023

CERI-KRISP/krisp-website

KRISP Website

CERI-KRISP/Molecular-epidemiology-of-SARS-CoV-2-in-Angola

Molecular epidemiology of SARS-CoV-2 in Angola

CERI-KRISP/mozambique_genomic_epi_analysis

CERI-KRISP/SARSCoV2_Omicron_Southern_Africa

CERI-KRISP/seqPatcher

CERI-KRISP/training_workshop_materials

Data processing, creation and publishing training material

CERI-KRISP/update_pangolin_json

Scripts to update pangolin.json lineage entries

CERI-KRISP/vmd