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Install R software from CRAN
Install all the packages mentioned inside the following scripts
Source code TACNA.R
Cross validation within one platform CCLE.R
Cross-study cross-validation GDSC by TCGA.R
listed on
dependencies.txt
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Please download test dataset files from http://www.genomicinstability.org/ -> Download support data -> Source code -> Source_codes.zip
Expresion data: CCLE__Affy_hgu133plus2_QCed_mRNA_NoDuplicates_CleanedIdentifiers_RMA-sketch_genelevel_using_jetscore.txt
Genomic mapping: Genomic mapping.csv
Run resources: job.sh
Run expected terminal output: test.out
Run example code: test code.R