/TACNA_profiling

Primary LanguageRGNU General Public License v3.0GPL-3.0

TACNA_profiling

Installing TACNA

  1. Install R software from CRAN

    Install all the packages mentioned inside the following scripts Source code TACNA.R Cross validation within one platform CCLE.R Cross-study cross-validation GDSC by TCGA.R

    listed on dependencies.txt

  2. Please download test dataset files from http://www.genomicinstability.org/ -> Download support data -> Source code -> Source_codes.zip

Running TACNA

Expresion data: CCLE__Affy_hgu133plus2_QCed_mRNA_NoDuplicates_CleanedIdentifiers_RMA-sketch_genelevel_using_jetscore.txt Genomic mapping: Genomic mapping.csv

Run resources: job.sh Run expected terminal output: test.out

Run example code: test code.R