GFF file error
hidvegin opened this issue · 1 comments
I have got a problem with TBtools. I use the latest version of TBTools. I would like to generate a Circos plot with Advanced Circos. I generated the succesfully the ChrLen file based on the original FASTA file. Also I generated the Gene Density profile based on the GFF file with gene annotations. But I stucked at the generate CpG, CHG and CHH density based on the GFF file which generated by SeqMonk. I tried modify the GFF file but I do not know which is the good format for TBTools.
I attached two GFF files in ZIP which I used to Gene Density profile. HFTH1.gene.gff is worked for me but CpG_closest.gff file did not worked in TBTools. How could I resolve this problem?
You might need to write a small script.