Pinned Repositories
brain-extraction
Brain Extraction tools comparison experiment
DICOMetrics
A Set of Methods to Calcualte Image Metrics that when they may be used to provide statistical quality control
DICOMetricsApp
A Simple Xamarin app to help with ImageMetrics quality control process.
DICOMetricsLearner
Server component that handles QCMetrcis computation
DICOMTransit
This is the staging server which preliminarily processed data and anonymize them before sending it to destinations such as CNBP
LORIS_MySQLStructure
Hosting SchemaSpy output from LORIS MySQL backend
neuroimaging-training-03
NIfTI-Image-Converter
🖼 A lightweight neuroimaging .nii to .png converter for Matlab and Python users
SeleRed
Webpage automation for booking systems.
SPM
BIDS App containing an instance of the SPM software.
Canadian Neonatal Brain Platform's Repositories
CNBP/DICOMetrics
A Set of Methods to Calcualte Image Metrics that when they may be used to provide statistical quality control
CNBP/DICOMTransit
This is the staging server which preliminarily processed data and anonymize them before sending it to destinations such as CNBP
CNBP/DICOMetricsApp
A Simple Xamarin app to help with ImageMetrics quality control process.
CNBP/brain-extraction
Brain Extraction tools comparison experiment
CNBP/DICOMetricsLearner
Server component that handles QCMetrcis computation
CNBP/LORIS_MySQLStructure
Hosting SchemaSpy output from LORIS MySQL backend
CNBP/neuroimaging-training-03
CNBP/NIfTI-Image-Converter
🖼 A lightweight neuroimaging .nii to .png converter for Matlab and Python users
CNBP/SeleRed
Webpage automation for booking systems.
CNBP/SPM
BIDS App containing an instance of the SPM software.
CNBP/BoutiquesDescriptors
Boutiques task descripts
CNBP/datagator
A simple Flask app that will collect data for LORIS
CNBP/DeepDiscovery
Deep Learning tools for medical image and biomarker analysis
CNBP/deepmedic
Efficient Multi-Scale 3D Convolutional Neural Network for Brain Lesion Segmentation
CNBP/dockerfile-templates
Dockerfile templates commonly used in BIDS Apps
CNBP/HyperDenseNet
This repository contains the code of HyperDenseNet, a hyper-densely connected CNN to segment medical images in multi-modal image scenarios.
CNBP/LiviaNET
This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"
CNBP/Loris
LORIS is a web-accessible database solution for longitudinal multi-site studies.
CNBP/Loris-MRI
The set of scripts that preprocess and insert MRI data into the database.
CNBP/LorisHelper
Helper scripts and other code for working with Loris
CNBP/N4BiasFieldCorrection
This is N4 bias field correction for MRI
CNBP/neuropredict
Easy and comprehensive assessment of predictive power, with support for neuroimaging features
CNBP/pfile-tools
GE P-File Utilities
CNBP/PowerEffect
A few simple python script to produce nice figures on sample size calculations, super useful during grant rush period.
CNBP/PyCap
REDCap in Python
CNBP/RCAPI
Customized RedCap API Client for CNBP
CNBP/TBSSVBA
Luis's pipeline to execute TBSS VBA analyses after ANT/FNIRT
CNBP/testRepo
This is a test Repo