Pinned Repositories
2023_ImageAnalysisSurvey
albumentations_3d
Paired augmentations (image, mask, weight map) for 3D multichannel images
bioimage_object_analysis_schema
docker_gradio_demo
Edwards---Exocytosis-event-detection
Image analysis pipeline to detect exocytosis (vesicle fusion at plasma membrane) on TIRF microscopy timelapse images
I2K_ST_data_analysis
i2kconference
I2K Conference Website
MicroscopyForBeginnersReferenceGuide
A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation
Newmark
Pipelines for the Newmark Lab Projects at UW-Madison
UNet_3D_C_elegans
3D segmentation of the C. elegans germ line
Center for Open Bioimage Analysis's Repositories
COBA-NIH/MicroscopyForBeginnersReferenceGuide
A Beginner's guide to microscopy, from sample prep to acquisition, image analysis, and data interpretation
COBA-NIH/I2K_ST_data_analysis
COBA-NIH/2023_ImageAnalysisSurvey
COBA-NIH/docker_gradio_demo
COBA-NIH/Edwards---Exocytosis-event-detection
Image analysis pipeline to detect exocytosis (vesicle fusion at plasma membrane) on TIRF microscopy timelapse images
COBA-NIH/albumentations_3d
Paired augmentations (image, mask, weight map) for 3D multichannel images
COBA-NIH/bioimage_object_analysis_schema
COBA-NIH/example-workflows
These are example workflows created via COBA's support of Driving Biomedical Projects (DBP) via our P41 grant from the NIH.
COBA-NIH/i2kconference
I2K Conference Website
COBA-NIH/Newmark
Pipelines for the Newmark Lab Projects at UW-Madison
COBA-NIH/UNet_3D_C_elegans
3D segmentation of the C. elegans germ line
COBA-NIH/FIJI_macros
Fiji macros
COBA-NIH/HardinLab
2020 02 06 COBA Embryonic epidermis, Jeff Hardin Lab (UW-Madison) - p_20embryonicepidermis
COBA-NIH/MaddoxLab-UNC-Oogenesis
Files to analyze 3D microscopy images of C elegans oogenesis
COBA-NIH/Barczak_Collagen
COBA-NIH/CellProfilerPluginsPaper
Repository for code and files related to CellProfiler Plugins paper
COBA-NIH/docker_notebook_demo
Demo repository for notebook-ization of any Python-containing Docker container
COBA-NIH/i2kconference2022
Archive of the 2022 conference website
COBA-NIH/i2kconference2023
Archive of the 2023 conference website
COBA-NIH/Introduction_To_Docker
Files to create your own Docker_beginner
COBA-NIH/McAllister_Spasic_Project
COBA-NIH/MicroscopyForBeginnersReferenceGuide_cs
COBA-NIH/MicroscopyForBeginnersReferenceGuide_es
Spanish translation of bioimagingguide.org
COBA-NIH/MicroscopyForBeginnersReferenceGuide_pt
COBA-NIH/NanoBioMaterialsLab-RIT-FibrilMorphology
CellProfiler pipelines to analyze the morphology of extracellular fibrils
COBA-NIH/SkalaLab
Improved pipelines (Organoids, Immune cells, Adherent cells) for Skala lab, UW-Madison
COBA-NIH/TRD2_protocols
COBA-NIH/Tutorials
COBA-NIH/WebImageAnalysisPerspective
Code supporting "Moving beyond the desktop: Prospects for Practical Bioimage Analysis via the Web" by Wei Ouyang, Beth A. Cimini, and Kevin W. Eliceiri