A collection of analyses of the results of Sailfish (and other quantifiers) on a growing collection of synthetic and real data.
An analysis in simulated data from the Soneson et al. paper.
For a further description of how these are computed, and a deeper analysis, take a look at the related Jupyter notebook.
kallisto_pearson: 0.97,0.98,0.96,0.98,0.97,0.95
kallisto_spearman: 0.98,0.98,0.98,0.98,0.98,0.98
sailfish_pearson: 1.0,1.0,1.0,1.0,1.0,1.0
sailfish_spearman: 0.98,0.98,0.98,0.98,0.98,0.98
mean of medians of signed relative differences is :
kallisto: -0.04
sailfish: 0.00
median of means of signed relative differences is :
kallisto: -0.04
sailfish: 0.00
mean of medians of abs relative differences is :
kallisto: 0.09
sailfish: 0.06
median of means of abs relative differences is :
kallisto: 0.29
sailfish: 0.28
For a further description of how these are computed, and a deeper analysis, take a look at the related Jupyter notebook.
kallisto_pearson: 1.0,0.99,1.0,1.0,1.0,1.0
kallisto_spearman: 0.92,0.92,0.92,0.92,0.92,0.92
sailfish_pearson: 1.0,1.0,1.0,1.0,1.0,1.0
sailfish_spearman: 0.92,0.92,0.92,0.92,0.92,0.92
mean of medians of signed relative differences is :
kallisto: 0.00
sailfish: 0.00
median of means of signed relative differences is :
kallisto: -0.01
sailfish: -0.01
mean of medians of abs relative differences is :
kallisto: 0.00
sailfish: 0.00
median of means of abs relative differences is :
kallisto: 0.23
sailfish: 0.23
using Sailfish 0.10.0 and kallisto 0.42.5
A re-analysis of the RSEM simulated data from the kallisto paper
For a further description of how these are computed, and a deeper analysis, take a look at the related Jupyter notebook.
mean of medians of signed relative differences is :
kallisto: 0.00
sailfish: 0.00
median of means of signed relative differences is :
kallisto: 0.02
sailfish: 0.02
mean of medians of abs relative differences is :
kallisto: 0.01
sailfish: 0.00
median of means of abs relative differences is :
kallisto: 0.28
sailfish: 0.28
using Sailfish 0.10.0 and kallisto 0.42.5