The CIF API provides a standard C interface for reading, writing, and manipulating Crystallographic Information Files (CIFs). It is targeted in particular at CIF 2.0, but it provides support for CIF 1.1 and earlier as well.
HTML documentation is available online at http://comcifs.github.io/cif_api/
The package includes several example programs to demonstrate API usage;
see src/examples/. These may optionally be built (and installed) with the
API library. One of them is a text-mode CIF 2.0 file syntax checker, which
might be of some interest. Also, the tests (src/tests/) collectively provide
a fairly comprehensive demonstration of API features, though their
primary purpose is to verify that the library works as intended.
The package also includes EXPERIMENTAL program cif_linguist, which converts
data between various versions of the CIF format. It is not built or
installed by default on account of its experimental nature, but configure
option --with-linguist will cause it to be included for building and
installation.
Refer to file INSTALL for general installation instructions. Build details specific to this package follow:
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The package depends on the International Components for Unicode (ICU), so its headers and development libraries are required to build the CIF API library and tests. At least the ICU development libraries will be required to build programs that use the CIF API library. The CIF API was developed and tested against ICU 4.2, and it is expected to be compatible also with subsequent versions and some earlier versions (at least back to v3.6, which was used in early development). In particular, it has been successfully built and tested against version 55-1.
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The package depends on SQLite for its CIF storage engine. It was developed and tested against SQLite 3.6.20, and is expected to work with many later versions. It depends on foreign key support, which was introduced in version 3.6.19, so versions earlier than that are not supported.
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Configuring the project for building requires the
pkg-configprogram and pkg-config data for ICU. -
The reference C compiler employed for package development was GNU gcc 4.4.7. Considerable effort was devoted, however, to restricting implementation code to the intersection of standard C90 and standard C99, and additionally to avoiding code that has different meaning in C and C++. With very few caveats, any compiler that is compliant with any one of C89/C90, C99, C2011, C++98, or C++2011 should be able to build the project. Building with a C++ compiler may require using the
--disable-c89-enforcementconfiguration option, however. -
At present, the
--enable-extra-warningsconfiguration option is effective only for gcc. -
There are a few other project-specific configuration options, but they are adequately explained in
configure's help text.
The package has been built and tested successfully on Linux (CentOS 6, Debian); this is the primary development platform), on OS X 10.8, and on Windows 7. For OS X builds, the needed dependencies are readily available via the "Fink" package management system and its public repositories, among other means. For Windows, the dependencies are available via the MinGW-w64 project, and further information is provided in file README_Windows. Those approaches assume you want to use the provided package build system; other approaches may be available if you want to build the project with a different toolchain, such as Visual Studio on Windows or XCode on OS X. The project has few, if any, toolchain dependencies, but only limited support is available for such build strategies.
The principal author of the CIF API software, documentation, and build system is John C. Bollinger, Ph.D, of Memphis, Tennessee, U.S.A.. E-mail correspondance intended for him may be directed to John <DOT> Bollinger <AT> StJude <DOT> org.
The CIF API comprises copyrighted property of several people and organizations, as marked on the files themselves or otherwise recorded among the CIF API files, including this one. Where not otherwise specified, CIF API files belong to John C. Bollinger, Ph.D. of Memphis, Tennessee, U.S.A.. Specific exceptions include, but are not necessarily limited to, the contents of the 'uthash' directory; those files are subject to the copyright statement and license in the file 'LICENSE' in that directory, and it is subject to those terms that they are distributed to you herein. Additionally, many components of the build system are parts of, or were generated via, the GNU AutoTools suite. These contain code belonging to the Free Software Foundation (FSF), and each is marked with an FSF ownership notice and statements of rights. The FSF components are distributed to you under the terms of version 3 of the GNU Public License (GPL). A copy of of GPL version 3 is provided in file 'COPYING'.
The International Union of Crystallography held a patent on the STAR file format, which is parent to CIF, and it is likely that the CIF API implementation provided herein practices that patent. This is moot, however, because the patent expired in 2010.
The CIF API is free software: you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
The CIF API is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public License along with the CIF API. If not, see http://www.gnu.org/licenses/.