COVID-IWG/epimargin

Issues

• add pytest suite

  #136 opened 3 years ago by satejsoman
  1

• unify parallelizing mechanisms

  #130 opened 3 years ago by satejsoman
  0

• Setting properties that do not exists

  #125 opened 3 years ago by dilawar
  1

• Run failure because of a dependency (`semver`) has removed functions

  #122 opened 3 years ago by dilawar
  2

• Type checking in policy.py

  #127 opened 3 years ago by dilawar
  0

• Type checking in models.py

  #126 opened 3 years ago by dilawar
  0

• model : SIR has missing `units`

  #124 opened 3 years ago by dilawar
  0

• Lint errors in core files

  #123 opened 3 years ago by dilawar
  0

• Lint errors

  #117 opened 3 years ago by dilawar
  2

• Invalid dependency version `zipp==4.1.0`

  #115 opened 3 years ago by dilawar
  1

• Write issue in directory returned by `cwd()`

  #116 opened 3 years ago by dilawar
  1

• refactor models subpackage to compose S(E)IR model units

  #85 opened 4 years ago by satejsoman
  0

• consider Erlang distribution for I->R draws

  #70 opened 4 years ago by satejsoman
  0

• refactor ETL code to use nested indices instead of passing around Dict[str, pd.DataFrame] objects

  #22 opened 4 years ago by satejsoman
  1

• make Model a subclass of ModelUnit so we can arbitrarily nest geographies

  #12 opened 4 years ago by satejsoman
  1

• regress branching factor on dI/dt and district-level fixed effects

  #15 opened 5 years ago by satejsoman
  0

• move log_delta functions to estimators

  #34 opened 4 years ago by satejsoman
  1

• calculate log deltas for cases only where confirmed[i] > 0

  #20 opened 4 years ago by satejsoman
  1

• centralize covid19india API functions and migration matrix functions in adaptive.etl package

  #59 opened 4 years ago by satejsoman
  0

• implement adaptive smoothing

  #60 opened 4 years ago by satejsoman
  0

• reverse convolve onset distribution and account for right-censoring in case time series

  #58 opened 4 years ago by satejsoman
  0

• run existing studies in CI on every commit

  #47 opened 5 years ago by satejsoman
  0

• add Bayesian and Gaussian Process estimation methods

  #2 opened 5 years ago by satejsoman
  0

• clean up Bihar studies to use as template for MH

  #35 opened 5 years ago by satejsoman
  0

• add LOESS smoothing option to estimators

  #17 opened 5 years ago by satejsoman
  1

• automatically check if COVID19India API has new data

  #53 opened 5 years ago by satejsoman
  1

• use bootstrap aggregation formulae to go from simulation range to proper confidence intervals

  #48 opened 5 years ago by satejsoman
  0

• account for mortality in b(t) calculations

  #45 opened 5 years ago by satejsoman
  0

• add data recency note to all simulations

  #44 opened 5 years ago by satejsoman
  0

• use covid19india.org data to estimate state-level pre-lockdown mobility in state-level studies

  #40 opened 5 years ago by satejsoman
  0

• refactor out column standardization to adaptive.utils

  #39 opened 5 years ago by satejsoman
  0

• add assert statements in ETL code to error when assumptions not met

  #38 opened 5 years ago by satejsoman
  0

• download covid19india.org data in india_districts ETL

  #23 opened 5 years ago by satejsoman
  0

• handle v5 of the covid19india.org API

  #26 opened 5 years ago by satejsoman
  0

• add phased-in urban-rural migration

  #29 opened 5 years ago by satejsoman
  0

• vary confirmed:true prevalence ratio

  #11 opened 5 years ago by satejsoman
  0

• check how many anomalies fall on a monday

  #21 opened 5 years ago by satejsoman
  0

• set number of days to be run as param in Model.run

  #3 opened 5 years ago by satejsoman
  0

• fix package structure

  #4 opened 5 years ago by satejsoman
  0

• backtest estimators on historical data

  #19 opened 5 years ago by satejsoman
  0

• back out case onset using given infectious period and time difference between (I, {R, D})

  #18 opened 5 years ago by satejsoman
  0

• check spy() and SVD of empirical migration matrix to make sure intra-state flows dominate inter-state flows

  #16 opened 5 years ago by satejsoman
  0

• show variance in simulation on SIRD curve plots

  #14 opened 5 years ago by satejsoman
  0

• add AUC and TTC evaluation metrics over n simulations

  #13 opened 5 years ago by satejsoman
  0

• use empirical estimates of effective reproductive number to back out contact rate

  #10 opened 5 years ago by satejsoman
  0

• add parameter for allowing R -> S transition (reinfection)

  #9 opened 5 years ago by satejsoman
  0

• compare policy scenario *death* rates not just infection curve

  #8 opened 5 years ago by satejsoman
  0

• renormalize tranmission matrix in adaptive release at each run

  #7 opened 5 years ago by satejsoman
  0

• require true adjacency matrix when allowing Green-Green flows

  #6 opened 5 years ago by satejsoman
  0

• add time-dependent equilibrium strategy determination

  #5 opened 5 years ago by satejsoman
  0