Pinned Repositories
cdeep3m
Please go to https://github.com/CRBS/cdeep3m2 for most recent version
zfsmon
Keep tabs on your ZFS storage with this lightweight script and webapp.
cdeep3m2
Plug-and-Play deep learning for image segmentation of large-scale microscopy data
CIL_PHP_Website
Display data using Elasticsearch and utilize the bootstrap layout
CIL_Image_Viewer
This image viewer utilizes the Leaflet library and the CodeIgniter PHP library for browsing the high definition images.
PyIMOD
A set of Python classes that enable the manipulation of IMOD model files.
probabilitymapviewer
Probability Map web viewer
CIL_RS
segmask
Masks a stack of segmented images into individual IMOD model files
nifmon
Center for Research in Biological Systems's Repositories
CRBS/chmutil
Utilities to run Cascaded Hierarchical Model (CHM) jobs on cluster of computers
CRBS/CIL_PHP_Website
Display data using Elasticsearch and utilize the bootstrap layout
CRBS/Biological_Imaging_Methods_Ontology
A structured controlled vocabulary of sample preparation, visualization and imaging methods used in biomedical research.
CRBS/CIL_Metadata_Forms
This app provides the metadata input forms for the CIL.
CRBS/CIL_Image_Viewer
This image viewer utilizes the Leaflet library and the CodeIgniter PHP library for browsing the high definition images.
CRBS/cildata_util
CIL Data Extraction Utility to download/convert data from legacy CIL website
CRBS/cdeep3m2
Plug-and-Play deep learning for image segmentation of large-scale microscopy data
CRBS/CIL_RS
CRBS/Image_Viewer_Data_Converter
Scripts for converting images to the compatible format for the CIL Image Viewer
CRBS/cdeep3m
Please go to https://github.com/CRBS/cdeep3m2 for most recent version
CRBS/nbcrtrainingvm
Contains a vagrant configuration to generate a virtual machine with software needed for NBCR summer training class
CRBS/probabilitymapviewer
Probability Map web viewer
CRBS/multicolor_em
ImageJ plugin to overlay color-coded nanoSIMS/EELS chemical maps over the Conventional EM images
CRBS/cildatatiler
CRBS/chm_singularity
Generates Singularity image for Cascaded Hierarchical Model (CHM)
CRBS/ncmirtools
Commandline tools for NCMIR
CRBS/Panfish
Multicluster job submission
CRBS/puppet-nbcrtrain
Puppet configuration to configure a Linux Centos machine with software needed for NBCR summer training course
CRBS/etspecutil
A set of utilities to run ET-SPEC (formerly known as Etphantom) from the command line
CRBS/segmask
Masks a stack of segmented images into individual IMOD model files
CRBS/PyIMOD
A set of Python classes that enable the manipulation of IMOD model files.
CRBS/morphome
Run organelle-specific morphometric analysis and visualization workflows by interfacing with Amira.
CRBS/autodockjobgenerator
AutoDockWrapper is a command line java application that generates Auto Dock jobs from a set of ligands and receptors that can be run directly or via Panfish on compute clusters.
CRBS/cws
CRBS Workflow Service -- Is a REST Service to enable execution of Kepler Workflows via Panfish
CRBS/openldap
CRBS/role
CRBS/core_firewall
Core firewall module. This module sets up the basic firewall. This module also is a wrapper/supplement for the main firewall module provided from forge.puppetlabs.com
CRBS/motd
Puppet MOTD Module
CRBS/yumrepos
Yum repository classes for Puppet
CRBS/beanstalk_console
Admin console for Beanstalk queue server