CRG-CNAG/CalliNGS-NF

GATK4 branch does not require separate Picard

jdwheaton opened this issue · 3 comments

The GATK4 jar has all of the Picard tools integrated, so it is no longer necessary to include a separate jar for Picard in the docker image nor to use the old command syntax which differs from the new GATK4 style.

I have made these changes in a local repository and can submit a PR if you'd like.

Nice! A PR is very welcome.

No problem.

Solved in #15

Merged. Thanks again!