suggest adding docker runOptions to nextflow.config

[jayoung]

hi there,

I'm looking at this after taking your nextflow class last week at Fred Hutch - thanks again for that: it was really helpful.

It might be good to add to the nextflow.config file something like this:
docker {
enabled = true
runOptions = "-u $(id -u):$(id -g)"
}

because I just ran the pipeline as is from github and now I have files in a work dir that I cannot delete!

Also enabling docker here would prevent us naive users from having to figure this issue out:
#9

thanks!

Janet

[pditommaso]

Makes sense! thanks for the tip. 👉 8572630.