CRG-CNAG/CalliNGS-NF

Cannot locate GATK.jar file

Jokendo-collab opened this issue · 1 comments

Jokendo-collab commented

I have over 200 RNAsew raw files and I wanted to run this program on our HPC, which uses slurm as a job scheduler. I keep on getting this error even after downloading the correct version (3.7) of the gatk jar file. Can you help me on how to configure this pipeline to run on HPC?