Cai Lab at University of Michigan
The Cai Laboratory develops and uses interdisciplinary techniques to study the development and fine tuning of neural circuits in the mouse brain.
Ann Arbor, Michigan, USA
Pinned Repositories
compression_paper_walker2023
Analysis scripts for "A Comparison of Lossless Compression Methods for Microscopy Data Storage" (Walker 2023)
MiCV
MiCV is a python dash-based web-application that enables researchers to upload raw scRNA-seq data and perform filtering, analysis, and manual annotation.
mmCoreAndDevices
Micro-Manager's device control layer, written in C++
nCorrect
A toolkit for the correction and normalization of SWC files from neuron morphology experiments.
neuron_volume_tools
nGauge
A Python library which provides a collection of tools for the measurement, quantification, and visualization of neuron morphology.
nTracer
Rolling release code for the nTracer ImageJ/Fiji plugin, as published in: Roossien DH, et. al, Bioinformatics 2019.
plscm_v1
Documentation for the parallel-line scanning confocal microscope design
public_tracing_datasets
Publicly-released neuron tracing datasets from Cai Lab papers.
TraceMontage
A ImageJ/Fiji plugin for the merging of multiple neuron traces between two images, as published in: Dizaji SA, Walker L, and Cai D, Journal of Neuroscience Methods 2019.
Cai Lab at University of Michigan's Repositories
Cai-Lab-at-University-of-Michigan/MiCV
MiCV is a python dash-based web-application that enables researchers to upload raw scRNA-seq data and perform filtering, analysis, and manual annotation.
Cai-Lab-at-University-of-Michigan/nGauge
A Python library which provides a collection of tools for the measurement, quantification, and visualization of neuron morphology.
Cai-Lab-at-University-of-Michigan/nTracer
Rolling release code for the nTracer ImageJ/Fiji plugin, as published in: Roossien DH, et. al, Bioinformatics 2019.
Cai-Lab-at-University-of-Michigan/public_tracing_datasets
Publicly-released neuron tracing datasets from Cai Lab papers.
Cai-Lab-at-University-of-Michigan/nCorrect
A toolkit for the correction and normalization of SWC files from neuron morphology experiments.
Cai-Lab-at-University-of-Michigan/TraceMontage
A ImageJ/Fiji plugin for the merging of multiple neuron traces between two images, as published in: Dizaji SA, Walker L, and Cai D, Journal of Neuroscience Methods 2019.
Cai-Lab-at-University-of-Michigan/compression_paper_walker2023
Analysis scripts for "A Comparison of Lossless Compression Methods for Microscopy Data Storage" (Walker 2023)
Cai-Lab-at-University-of-Michigan/lossy_image_storage_2024
Cai-Lab-at-University-of-Michigan/mmCoreAndDevices
Micro-Manager's device control layer, written in C++
Cai-Lab-at-University-of-Michigan/neuron_volume_tools
Cai-Lab-at-University-of-Michigan/plscm_v1
Documentation for the parallel-line scanning confocal microscope design