Pinned Repositories
alphafold
Open source code for AlphaFold.
bioconda-recipes
Conda recipes for the bioconda channel.
cell-cycle-progression
chatgpt_academic
科研工作专用ChatGPT拓展，特别优化学术Paper润色体验，支持自定义快捷按钮，支持markdown表格显示，Tex公式双显示，代码显示功能完善，新增本地Python工程剖析功能/自我剖析功能
ctxcore
Core functions for pycisTarget and the SCENIC tool suite
scAR
scAR (single-cell Ambient Remover) is a package for data denoising in single-cell omics.
scAR-reproducibility
Scripts to reproduce the results of scAR manuscript 'Probabilistic modeling of ambient noise in single-cell omics data'
TIDEpy
TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade in Python.
IGSF8-NK
This repository contains the scripts to reproduce the figures for our paper titled 'IGSF8 is an Innate Immune Checkpoint and Cancer Immunotherapy Target'
scar
scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics
CaibinSh's Repositories
CaibinSh/ctxcore
Core functions for pycisTarget and the SCENIC tool suite
CaibinSh/scAR
scAR (single-cell Ambient Remover) is a package for data denoising in single-cell omics.
CaibinSh/scAR-reproducibility
Scripts to reproduce the results of scAR manuscript 'Probabilistic modeling of ambient noise in single-cell omics data'
CaibinSh/TIDEpy
TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade in Python.
CaibinSh/alphafold
Open source code for AlphaFold.
CaibinSh/bioconda-recipes
Conda recipes for the bioconda channel.
CaibinSh/cell-cycle-progression
CaibinSh/chatgpt_academic
科研工作专用ChatGPT拓展，特别优化学术Paper润色体验，支持自定义快捷按钮，支持markdown表格显示，Tex公式双显示，代码显示功能完善，新增本地Python工程剖析功能/自我剖析功能
CaibinSh/GANs
Codes and materials for GANs course from Deeplearning.AI
CaibinSh/IGSF8-NK
This repository contains the scripts to reproduce the figures for our paper titled 'IGSF8 is an Innate Immune Checkpoint and Cancer Immunotherapy Target'
CaibinSh/Intro-to-ChIPseq
Intro to ChIPseq using HPC
CaibinSh/Probabilistic-Programming-and-Bayesian-Methods-for-Hackers
aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)
CaibinSh/scvi-tools
Deep probabilistic analysis of single-cell omics data
CaibinSh/standard-readme
Standard Readme Style
CaibinSh/time-series-fitness-screen
This repository contains codes to model multiple time-point genetic screen