CalCOFI
one of the longest marine ecosystem time series (70+ years) | open data to support climate change solutions
Scripps Institution of Oceanography | San Diego, CA, USA
Pinned Repositories
api
Test application programming interface (API)
CalCOFI_eDNA
Data and code needed to conduct analysis for Marine Heatwave-Driven Impacts on Fish Assemblages Uncovered Through Archived DNA
capstone
Capstone project for CCDSP fellowship, where we will store data and code
hypoxia-story
OceanView
App that can incentivize ocean users to report their observations
rCRUX
A repository for my work on rCRUX
SaferSeafood
Repository containing files and data for developing the R Shiny online application.
server
calcofi.io server setup for R Shiny apps, RStudio IDE, R Plumber API, temporary PostGIS database, pg_tileserv
viz-gallery
Test for data visualization gallery
workflows
helper scripts in R for common workflows
CalCOFI's Repositories
CalCOFI/rCRUX
A repository for my work on rCRUX
CalCOFI/api
Test application programming interface (API)
CalCOFI/capstone
Capstone project for CCDSP fellowship, where we will store data and code
CalCOFI/hypoxia-story
CalCOFI/OceanView
App that can incentivize ocean users to report their observations
CalCOFI/CalCOFI_eDNA
Data and code needed to conduct analysis for Marine Heatwave-Driven Impacts on Fish Assemblages Uncovered Through Archived DNA
CalCOFI/SaferSeafood
Repository containing files and data for developing the R Shiny online application.
CalCOFI/server
calcofi.io server setup for R Shiny apps, RStudio IDE, R Plumber API, temporary PostGIS database, pg_tileserv
CalCOFI/viz-gallery
Test for data visualization gallery
CalCOFI/workflows
helper scripts in R for common workflows
CalCOFI/apps
Shiny app demo for CalCOFI
CalCOFI/CalCOFI.github.io
Default Github products website
CalCOFI/calcofi4r
R package of data wrangling and visualization functions for working with CalCOFI data
CalCOFI/CalCOFI_3yr_Review
Code for CalCOFI's 3 year review
CalCOFI/CalCOFI_map
Map of CalCOFI station grid
CalCOFI/docs
Help documentation for the constellation of webenized and workflow products (in bookdown)
CalCOFI/eDNA-protocols
Protocols for sampling, processing, and analysis of eDNA collected on CalCOFI cruises. All protocols are formatted according to guidelines from Better Biomolecular Ocean Practices (BeBOP) using Minimum Information about an Omics Protocol (MIOP) terms.
CalCOFI/larvae-cinms
Extraction of CalCOFI larvae data for Channel Islands Webenized Condition Report
CalCOFI/pollutants-app
Pollutants app (starting with DDT, PFAS, microplastics) with CalCOFI regional partners
CalCOFI/prj-mgt
project management