scTDA implementation with our own data

[VENRIQUEZ2120]

Hi @pcamara , I read your paper and you did an amazing tool, and now we want to use it in the lab.
We tried to use our own data following the previous comments in the 'Data Input' issue, and the network looks like we expected but we're having some issues, since we are not seeing the patterns we were expecting (when coloring by regulon or by timepoints).
When using your data everything works well but we wonder why is it that ours doesn't work, as far as we are aware of, our name.all.tsv has the same format as the one in the tutorial.
Any idea of what can we be doing wrong?
I can provide more details about the issue.
Thanks!