Pinned Repositories
ANTLR_MPS
An ANTLR language for MPS, and the ToMPS language to help create MPS languages and ANTRL visitors from an ANTLR 4 grammar.
Editor2PDF
Provides a mechanism to render an MPS editor to PDF automatically.
GenotypeTensors
This project provides tools to load the vectorized genotype information files (.vec/.vecp) produced with goby3 and variation analysis. It also demonstrates how to train deep-learning models using information in these files with pytorch.LICENSE
goby
Goby framework and tools for analysis of high-throughput sequencing data
goby3
Releases 3.+ of the Goby High-throughput sequencing framework and tools.
MetaR
Simple Data Analysis language built with MPS. Generates R code. Metaprogramming in R, thus the name.
NextflowWorkbench
An implementation of Nextflow.io with Language Workbench Technology. The project helps create computational pipelines that run with the Nextflow.io middleware. Includes dockerfile language and IDE-like support for docker.
NYoSh
NYoSh languages and IDE Workbench
UML_Diagrams
Language to assemble UML class diagrams a subset of concepts from MPS Languages.
variationanalysis
This repository holds the companion project to Goby3, used to train and evaluate deep learning models to call variations. This repository contains the Matcha framework to help train and evaluate deep learning models trained with semi-simulation. See docs below for details.
Campagne Laboratory's Repositories
CampagneLaboratory/optimization
Optimization module used by various Campagne lab projects
CampagneLaboratory/RUtils
RUtil package to facilitation connecting to R from Java
CampagneLaboratory/icb-ant-tasks
CampagneLaboratory/icb-stats
Stat package used across several Campagne lab projects
CampagneLaboratory/qtclustering
An implementation of the QTClustering algorithm in Java
CampagneLaboratory/squil
Sequence utilities written in Java and optimized for performance on large files.