Pinned Repositories
admixture_pie_chart_map_tutorial
Tutorial for visualising admixture on a map
admixturePipeline
A pipeline that accepts a VCF file to run through Admixture
BayesAss3-SNPs
Modification of BayesAss 3.0.4 to allow handling of large SNP datasets
Clases
CMplot
📊 Circular and Rectangular Manhattan Plot
conStruct
method for modeling continuous and discrete population genetic structure
dartR
Importing and Analysing DArT type snp and silicodart data
dartseq_code
In-progress scripts for DArTseq processing and analysis
DArTseq_pipeline
Scripts for DArTseq_pipeline
Dsuite
Fast calculation of Paterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species
Canales-AguirreCB's Repositories
Canales-AguirreCB/admixture_pie_chart_map_tutorial
Tutorial for visualising admixture on a map
Canales-AguirreCB/admixturePipeline
A pipeline that accepts a VCF file to run through Admixture
Canales-AguirreCB/BayesAss3-SNPs
Modification of BayesAss 3.0.4 to allow handling of large SNP datasets
Canales-AguirreCB/Clases
Canales-AguirreCB/CMplot
📊 Circular and Rectangular Manhattan Plot
Canales-AguirreCB/conStruct
method for modeling continuous and discrete population genetic structure
Canales-AguirreCB/dartR
Importing and Analysing DArT type snp and silicodart data
Canales-AguirreCB/DArTseq_pipeline
Scripts for DArTseq_pipeline
Canales-AguirreCB/Dsuite
Fast calculation of Paterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species
Canales-AguirreCB/EasyParallel
Canales-AguirreCB/Ferrada-Fuentes_etal_2023_Fishes
Data microsatellite of Trachurus murphyi used in the article Ferrada-Fuentes et al. (2023) published in Fishes
Canales-AguirreCB/genotype_plot
A set of functions to visualise genotypes based on a VCF
Canales-AguirreCB/ggcoverage
Visualize and annotate genomic coverage with ggplot2
Canales-AguirreCB/ggman
R package to create manhattan plots using ggplot
Canales-AguirreCB/lecluvindex
Chilean UV index plugin for the Le bot.
Canales-AguirreCB/marmap
Import, plot and analyze bathymetric and topographic data
Canales-AguirreCB/MitoZ
MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
Canales-AguirreCB/OutlierFst
Canales-AguirreCB/physalia-lcwgs
Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 11-14, 2021
Canales-AguirreCB/phytools
Canales-AguirreCB/popgen-notes
Population genetics notes
Canales-AguirreCB/primer3
Primer3 is a command line tool to select primers for polymerase chain reaction (PCR).
Canales-AguirreCB/redlistManipulatr
redlistManipulatr collects a group of functions used to pull and manipulate IUCN Red List habitat and elevation data
Canales-AguirreCB/scrivomatic
A writing workflow using Scrivener's style system and Pandoc for output…
Canales-AguirreCB/seascape_rda_tutorial
Tutorial for performing redundancy analysis
Canales-AguirreCB/SexFindR
Canales-AguirreCB/utility_scripts
Scripts for population genetics analysis
Canales-AguirreCB/vcf2conStruct
convert VCF biallelic SNP data to format required for conStruct R package (https://github.com/gbradburd/conStruct)
Canales-AguirreCB/VcfHunter
VcfExplorer regroups several programs which principal aims are to map DNA and RNAseq data onto reference genome sequence, perform variant calling, manipulate vcf files, perform chromosome painting of accessions based on the contribution of ancestral groups, select marker for genetic map analysis and perform pairwise chromosome linkage of ordered markers.
Canales-AguirreCB/VCFStat