Pinned Repositories
Bioinfo_scripts
Misc scripts than can be useful for bioinformatics
BioinfoCareerFair
calculate-gene-abundance
CarolinaPB.github.io
gbs-genetic-fitness
pipeline to perform gbs and genetic fitness analysis
nanopore-assembly
Pipeline to assemble oxford nanopore long sequencing reads and perform variant calling with long and short reads
population-mapping
Pipeline to map short reads from several samples to a reference genome
population-structural-var-calling-smoove
population structural variant calling with smoove
snakemake-template
Template directory for creating a snakemake pipeline
WUR_mapping-variant-calling
Short read mapping and variant calling
CarolinaPB's Repositories
CarolinaPB/nanopore-assembly
Pipeline to assemble oxford nanopore long sequencing reads and perform variant calling with long and short reads
CarolinaPB/Bioinfo_scripts
Misc scripts than can be useful for bioinformatics
CarolinaPB/population-structural-var-calling-smoove
population structural variant calling with smoove
CarolinaPB/CarolinaPB.github.io
CarolinaPB/gbs-genetic-fitness
pipeline to perform gbs and genetic fitness analysis
CarolinaPB/snakemake-template
Template directory for creating a snakemake pipeline
CarolinaPB/WUR_mapping-variant-calling
Short read mapping and variant calling
CarolinaPB/BioinfoCareerFair
CarolinaPB/calculate-gene-abundance
CarolinaPB/Cheap_SJ
Find cheap trains using SJ in Sweden
CarolinaPB/InfoManagementSystems
Labbi - lab inventory management software
CarolinaPB/LDSA_project
CarolinaPB/population-mapping
Pipeline to map short reads from several samples to a reference genome
CarolinaPB/create_species_map
CarolinaPB/DegreeProject
Repository for Bioinformatics master degree project - Causality in coexpression
CarolinaPB/GenomeAnalysis
Repository for project for Genome Analysis course at UU
CarolinaPB/mapping-var-calling
Map short reads to assembly, do variant calling and mapping quality assessment
CarolinaPB/polish-assembly-shortreads
Polish assembly with short reads
CarolinaPB/population-variant-calling
CarolinaPB/PySpams
CarolinaPB/RaukR
notes and exercises from RaukR course 2023
CarolinaPB/regexcite
Package for RaukR2023 course
CarolinaPB/single-cell-data-processing
Steps to do preprocessing of single cell data
CarolinaPB/Technical-exercise
CarolinaPB/testgit
CarolinaPB/theme
gh pages theme
CarolinaPB/whole-genome-alignment