Pinned Repositories
AAC
AAC KG
caseolap
CaseOLAP: A cloud computing platform for phrase mining. This consists of downloading, parsing, and indexing of data, text-cube creation, entity count with search functionality, and caseOLAP score calculation.
caseolap-pipelines
Demo of pipelines in CaseOLAP platform and sample data. These pipelines consists of downloading, parsing, indexing of data, text-cube creation and search of entities.
caseolap_lift
Code associated with the paper, “A knowledge graph approach to elucidate the role of organellar pathways in disease via biomedical reports".
caseolap_statistical_evaluation
cvd-sunburst
Sunbrust plot of CVD MeSH count. The sunbrust plot is created by implementing d3.js package with the data obtained from MESH to PMID mapping.
dataviz
Web app to visualization of CaseOLAP Score for entity category association.
mesh2pmid-mapping
Demo of MeSH to PMID MApping. This mapping accounts the number of documents associated with specific MESH descriptors. The obtained mapping data are visualized implementing D3.js library.
reactom-web-api
Implementing Reactom API to visualize Reactom Pathways in web page.
uniprotKG
Exploration of Post-translational modifications (PTMs) through knowledge graph approach
CaseOLAP's Repositories
CaseOLAP/caseolap
CaseOLAP: A cloud computing platform for phrase mining. This consists of downloading, parsing, and indexing of data, text-cube creation, entity count with search functionality, and caseOLAP score calculation.
CaseOLAP/caseolap_lift
Code associated with the paper, “A knowledge graph approach to elucidate the role of organellar pathways in disease via biomedical reports".
CaseOLAP/caseolap-pipelines
Demo of pipelines in CaseOLAP platform and sample data. These pipelines consists of downloading, parsing, indexing of data, text-cube creation and search of entities.
CaseOLAP/AAC
AAC KG
CaseOLAP/Biomedical-CaseOLAP-PD
Summer 2022: A text mining application for PubMed publications. A biomedical application of CaseOLAP with improved entity name filtering, more readable code, and easier to re-run. This only uses Popularity (P) and Distinctiveness (D), not integrity.
CaseOLAP/cardiac_proteome_caseolap
Defining relationships among functional cardiac subproteomes and heart disease
CaseOLAP/caseolap.github.io
CaseOLAP Website [Front line]. This demo website consists of general information about CaseOLAP and it's implementation as well as sample results.
CaseOLAP/caseolap_statistical_evaluation
CaseOLAP/covid-cvd
Understanding the Molecular Interface of Cardiovascular Disease and COVID-19: A Data Science Approach
CaseOLAP/covid-cvd-knowledgegraph
Understanding the Molecular Interface of Heart Disease and COVID-19: A Data Science Approach with Knowledgegraph
CaseOLAP/cvd-sunburst
Sunbrust plot of CVD MeSH count. The sunbrust plot is created by implementing d3.js package with the data obtained from MESH to PMID mapping.
CaseOLAP/dataviz
Web app to visualization of CaseOLAP Score for entity category association.
CaseOLAP/IonChannel
Ca regulating Ion Channels and Oxidative Stress as a Potential Link for the understanding of Cardiovascular Diseases: A data science approach.
CaseOLAP/mesh2pmid-mapping
Demo of MeSH to PMID MApping. This mapping accounts the number of documents associated with specific MESH descriptors. The obtained mapping data are visualized implementing D3.js library.
CaseOLAP/reactom-web-api
Implementing Reactom API to visualize Reactom Pathways in web page.
CaseOLAP/uniprotKG
Exploration of Post-translational modifications (PTMs) through knowledge graph approach
CaseOLAP/AutoPhrase
AutoPhrase: Automated Phrase Mining from Massive Text Corpora
CaseOLAP/brrr
BRRR - Biomedical Reference Range Resources
CaseOLAP/chemicaltree
Demo of Chemical and Drugs Tree (MeSH). These trees are visualized implementing D3.js library.
CaseOLAP/docs
Documentation for CaseOLAP platform. This documents provides a demo for sample application.
CaseOLAP/pubtator
Retrieve and process PubTator annotations