SOMexample:

Self Organizing Maps (SOM): Example using RNAseq reads

This directory is for learning about how to run clustering analysis using Self Organizing Maps using the kohonen package in R.

To run examples, please download all files and keep files in the same folders they were downloaded in.

New to Githb?: There is a green button that says "clone or download", there is a "download" zip file option here.

Directory Structure

data: Data need to run tutorials. Including output, input, and required data for further analysis after running SOMs.

pdf: Knitted output PDFs from the .Rmd files.

r: Rmd R markdown files with all original code. Please set working directory to this directory to run all code.